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H1c1_full_scaffold_271_prodigal-single.1__X__X__00146
Bact-VirH1c1_full_scaffold_271_prodigal-single.1__X__X__00146
Identity
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-81
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 37.0 | 4.42e-01 | 89.5% | 75.5% |
| 2d5mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.66 | 50.0 | 3.78e-01 | 81.6% | 59.6% |
| 2m4vA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.64 | 37.0 | 3.63e-01 | 78.9% | 53.8% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 34.0 | 3.74e-01 | 88.2% | 69.0% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 34.0 | 3.61e-01 | 92.1% | 62.7% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 46.0 | 3.88e-01 | 88.2% | 59.3% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.58 | 46.0 | 3.57e-01 | 88.2% | 86.1% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 46.0 | 3.52e-01 | 89.5% | 46.1% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.56 | 41.0 | 3.40e-01 | 77.6% | 64.5% |
| 3kf6A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 41.0 | 3.44e-01 | 81.6% | 59.6% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 40.0 | 3.61e-01 | 77.6% | 95.2% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 46.0 | 4.19e-01 | 97.4% | 87.6% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.54 | 44.0 | 4.18e-01 | 96.1% | 85.1% |
| 1n02A00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.54 | 41.0 | 3.74e-01 | 82.9% | 99.0% |
| 2odpA03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 43.0 | 3.40e-01 | 90.8% | 70.9% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.53 | 33.0 | 3.72e-01 | 88.2% | 94.0% |
| 2l2fA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.52 | 40.0 | 3.57e-01 | 82.9% | 99.1% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 39.0 | 2.53e-01 | 84.2% | 56.0% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 37.0 | 3.82e-01 | 97.4% | 80.3% |
| 4glaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 38.0 | 3.65e-01 | 80.3% | 83.1% |
| 2x1wO01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 4.05e-01 | 100.0% | 76.8% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 41.0 | 3.57e-01 | 92.1% | 83.5% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 3.55e-01 | 98.7% | 67.9% |
| 5a2fA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 43.0 | 3.93e-01 | 98.7% | 85.8% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964188 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.73 | 53.0 | 5.38e-01 | 96.1% | 78.7% |
| 4497740 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.67 | 36.0 | 3.95e-01 | 88.2% | 63.3% |
| 3587789 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.67 | 35.0 | 3.12e-01 | 77.6% | 35.2% |
| 4971509 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.67 | 51.0 | 5.15e-01 | 81.6% | 90.7% |
| 3285863 | 375.1.1.49 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RbpA | 0.64 | 39.0 | 3.53e-01 | 81.6% | 46.0% |
| 4461345 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.64 | 49.0 | 3.64e-01 | 81.6% | 57.4% |
| 2770740 | 4012.3.1.3 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI2 | 0.63 | 45.0 | 4.98e-01 | 78.9% | 95.0% |
| 4982958 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.60 | 50.0 | 4.62e-01 | 98.7% | 70.0% |
| 3973332 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 43.0 | 4.32e-01 | 96.1% | 76.0% |
| 4241460 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.59 | 36.0 | 2.96e-01 | 80.3% | 34.1% |
| 3969569 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.58 | 32.0 | 3.47e-01 | 88.2% | 61.7% |
| 3165403 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.58 | 34.0 | 3.62e-01 | 81.6% | 66.2% |
| 3781 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.58 | 46.0 | 3.44e-01 | 86.8% | 63.2% |
| 2770736 | 4967.1.1.14 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb | 0.58 | 45.0 | 3.41e-01 | 86.8% | 59.3% |
| 4067945 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.56 | 39.0 | 3.54e-01 | 72.4% | 84.8% |
| 3967128 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.55 | 36.0 | 3.81e-01 | 97.4% | 74.3% |
| 3253366 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 4.33e-01 | 98.7% | 84.0% |
| 3056322 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 46.0 | 4.13e-01 | 97.4% | 83.6% |
| 3166879 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.54 | 43.0 | 4.58e-01 | 97.4% | 100.0% |
| 3596623 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 46.0 | 4.37e-01 | 96.1% | 80.0% |
| 3916068 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.54 | 43.0 | 3.60e-01 | 100.0% | 48.3% |
| 4325808 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.54 | 40.0 | 3.74e-01 | 80.3% | 91.6% |
| 3969131 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 45.0 | 4.23e-01 | 96.1% | 86.3% |
| 4443040 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.54 | 37.0 | 3.36e-01 | 97.4% | 51.9% |
| 4159666 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 39.0 | 3.49e-01 | 77.6% | 56.0% |
| 150973 | 4967.1.1.5 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_3 | 0.53 | 42.0 | 3.07e-01 | 86.8% | 57.9% |
| 3719290 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.52 | 44.0 | 3.07e-01 | 98.7% | 49.8% |
| 4183857 | 325.1.7.30 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 | 0.52 | 36.0 | 3.65e-01 | 72.4% | 100.0% |
| 4353121 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.52 | 38.0 | 3.57e-01 | 80.3% | 92.0% |
| 4431372 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.51 | 37.0 | 3.52e-01 | 78.9% | 91.6% |
| 4089092 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.50 | 38.0 | 2.76e-01 | 82.9% | 27.7% |
| 3225114 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 43.0 | 3.50e-01 | 97.4% | 59.3% |