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H1c1_full_scaffold_271_prodigal-single.1__X__X__00159
Bact-VirH1c1_full_scaffold_271_prodigal-single.1__X__X__00159
Identity
- Kingdom:
- phage
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-71
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h61A00 | 3.10.450.580 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 | 0.80 | 56.0 | 4.28e-01 | 76.2% | 33.6% |
| 2pbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.71 | 49.0 | 3.38e-01 | 84.1% | 21.1% |
| 6g1yA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.66 | 55.0 | 4.51e-01 | 95.2% | 70.8% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.65 | 52.0 | 4.43e-01 | 88.9% | 79.8% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.64 | 56.0 | 3.45e-01 | 100.0% | 50.4% |
| 3girA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.64 | 54.0 | 4.94e-01 | 98.4% | 70.9% |
| 1yx2A02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.64 | 54.0 | 4.92e-01 | 98.4% | 70.9% |
| 3li9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 53.0 | 4.36e-01 | 100.0% | 62.1% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 45.0 | 3.41e-01 | 79.4% | 48.8% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.62 | 52.0 | 3.36e-01 | 100.0% | 56.1% |
| 2qxlB05 | 2.60.34.10 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 | 0.61 | 51.0 | 4.13e-01 | 95.2% | 74.8% |
| 3g7kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.59 | 47.0 | 3.45e-01 | 92.1% | 83.1% |
| 6obtA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.59 | 45.0 | 2.99e-01 | 84.1% | 38.4% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.58 | 47.0 | 3.81e-01 | 90.5% | 90.1% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 46.0 | 3.61e-01 | 92.1% | 47.9% |
| 3sc7X01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 48.0 | 3.04e-01 | 96.8% | 19.0% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.56 | 49.0 | 3.57e-01 | 96.8% | 48.9% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 48.0 | 4.07e-01 | 100.0% | 71.2% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.56 | 50.0 | 4.74e-01 | 100.0% | 94.8% |
| 6m90A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 2.98e-01 | 90.5% | 28.8% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.56 | 43.0 | 3.37e-01 | 82.5% | 61.8% |
| 3lh4A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 44.0 | 3.73e-01 | 90.5% | 82.6% |
| 4hrvA00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.56 | 43.0 | 3.41e-01 | 85.7% | 73.4% |
| 1pn2D02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 44.0 | 3.54e-01 | 88.9% | 91.9% |
| 3w15A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 44.0 | 2.83e-01 | 96.8% | 17.4% |
| 1l7aA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 40.0 | 2.63e-01 | 84.1% | 26.1% |
| 7rd0A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 45.0 | 2.94e-01 | 100.0% | 89.4% |
| 4aefA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.57e-01 | 85.7% | 91.6% |
| 3gmvX00 | 3.10.450.730 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain | 0.53 | 45.0 | 3.45e-01 | 100.0% | 39.7% |
| 3fcyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 39.0 | 2.57e-01 | 84.1% | 26.2% |
| 3iylW05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.38e-01 | 81.0% | 97.9% |
| 1cboA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 38.0 | 2.50e-01 | 85.7% | 64.8% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.51 | 41.0 | 3.19e-01 | 98.4% | 66.5% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3264903 | 3195.1.1.1 ↗ | extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 | 0.79 | 54.0 | 4.11e-01 | 76.2% | 32.1% |
| 2075292 | 3195.1.1.1 ↗ | extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 | 0.76 | 55.0 | 4.11e-01 | 79.4% | 32.0% |
| 4496894 | 2003.1.5.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 | 0.71 | 51.0 | 3.43e-01 | 84.1% | 20.4% |
| 3576335 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.71 | 53.0 | 3.28e-01 | 79.4% | 27.1% |
| 5053325 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.68 | 58.0 | 4.94e-01 | 100.0% | 90.0% |
| 3939672 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 49.0 | 4.10e-01 | 79.4% | 74.5% |
| 5046744 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.66 | 55.0 | 4.79e-01 | 100.0% | 92.4% |
| 3582164 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.65 | 55.0 | 3.62e-01 | 100.0% | 29.3% |
| 3611425 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 44.0 | 3.98e-01 | 71.4% | 61.2% |
| 5059339 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.64 | 54.0 | 4.51e-01 | 100.0% | 89.2% |
| 4998603 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.64 | 58.0 | 5.44e-01 | 100.0% | 97.3% |
| 5018913 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.63 | 54.0 | 4.46e-01 | 100.0% | 80.8% |
| 3377988 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 46.0 | 4.01e-01 | 79.4% | 81.0% |
| 3858424 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.63 | 49.0 | 4.21e-01 | 87.3% | 87.6% |
| 5039380 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 46.0 | 2.93e-01 | 81.0% | 22.6% |
| 3588277 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.61 | 55.0 | 4.47e-01 | 98.4% | 78.3% |
| 5044942 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.61 | 50.0 | 4.43e-01 | 100.0% | 88.6% |
| 3974189 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.60 | 47.0 | 3.87e-01 | 88.9% | 72.0% |
| 3947188 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 51.0 | 4.32e-01 | 95.2% | 72.4% |
| 4962396 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.59 | 50.0 | 4.30e-01 | 100.0% | 80.0% |
| 3896326 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.59 | 46.0 | 3.41e-01 | 88.9% | 32.8% |
| 3181617 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.59 | 51.0 | 3.12e-01 | 98.4% | 20.0% |
| 3255575 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 47.0 | 3.04e-01 | 90.5% | 24.1% |
| 4960081 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.58 | 49.0 | 4.34e-01 | 100.0% | 88.0% |
| 5048830 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 50.0 | 4.08e-01 | 100.0% | 65.6% |
| 3808162 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 46.0 | 4.10e-01 | 87.3% | 78.9% |
| 5034706 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.58 | 43.0 | 4.13e-01 | 84.1% | 68.0% |
| 3937921 | 5.1.3.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd | 0.58 | 48.0 | 3.06e-01 | 93.7% | 32.7% |
| 3825682 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.58 | 45.0 | 3.93e-01 | 87.3% | 75.8% |
| 3789793 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 48.0 | 2.71e-01 | 93.7% | 16.1% |
| 3564163 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 47.0 | 2.88e-01 | 93.7% | 28.7% |
| 3790115 | 5.1.4.341 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd | 0.57 | 48.0 | 2.96e-01 | 93.7% | 38.4% |
| 3597435 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 48.0 | 3.01e-01 | 95.2% | 16.0% |
| 4945459 | 5.1.4.87 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD | 0.57 | 48.0 | 3.13e-01 | 96.8% | 19.7% |
| 4019945 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.57 | 49.0 | 3.04e-01 | 98.4% | 17.6% |
| 3742310 | 5.1.4.38 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 | 0.56 | 48.0 | 3.11e-01 | 96.8% | 29.2% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.56 | 45.0 | 3.52e-01 | 92.1% | 91.3% |
| 3548957 | 5.1.4.241 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › eIF2A | 0.56 | 45.0 | 2.76e-01 | 95.2% | 13.3% |
| 3394663 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.55 | 45.0 | 4.51e-01 | 96.8% | 92.3% |
| 3370941 | 295.1.1.35 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FBA_1 | 0.55 | 45.0 | 3.40e-01 | 95.2% | 35.2% |
| 3262017 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.55 | 43.0 | 3.09e-01 | 90.5% | 28.6% |
| 3219425 | 5.1.3.238 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 | 0.55 | 47.0 | 3.73e-01 | 95.2% | 61.6% |
| 3666858 | 9.1.1.9 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT | 0.53 | 43.0 | 3.17e-01 | 96.8% | 80.3% |
| 3297678 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 42.0 | 3.57e-01 | 92.1% | 53.0% |
| 3947082 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 44.0 | 4.02e-01 | 96.8% | 68.9% |
| 3829694 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.53 | 43.0 | 2.81e-01 | 93.7% | 30.2% |
| 3619246 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 42.0 | 3.68e-01 | 95.2% | 71.4% |
| 4960511 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.52 | 42.0 | 2.85e-01 | 92.1% | 47.4% |
| 3879303 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.51 | 37.0 | 3.56e-01 | 82.5% | 75.0% |
| 4123847 | 7579.1.1.27 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 | 0.51 | 38.0 | 2.50e-01 | 84.1% | 27.4% |
| 3928618 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 43.0 | 3.75e-01 | 100.0% | 72.4% |
| 4340836 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.51 | 39.0 | 3.90e-01 | 92.1% | 94.3% |
| 3957726 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.51 | 38.0 | 2.83e-01 | 84.1% | 57.8% |
| 4087213 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.50 | 40.0 | 3.90e-01 | 96.8% | 93.3% |