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H1c1_full_scaffold_271_prodigal-single.1__X__X__00208

Bact-Vir

H1c1_full_scaffold_271_prodigal-single.1__X__X__00208

Identity

Kingdom:
phage

Quality

73.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-65
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vxoA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.74 45.0 3.01e-01 100.0% 17.6%
3k4oA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.62 43.0 2.84e-01 100.0% 17.7%
4uulA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.61 53.0 3.84e-01 96.8% 97.3%
3hwcA01 1.10.3140.10 Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 0.58 39.0 3.04e-01 95.2% 29.9%
1z1nX01 3.90.10.10 Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 0.58 38.0 3.34e-01 95.2% 43.4%
2q1fA02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.56 47.0 2.89e-01 93.7% 63.8%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.55 43.0 4.20e-01 92.1% 74.6%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 48.0 3.85e-01 100.0% 62.9%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 49.0 4.30e-01 100.0% 87.8%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 40.0 3.17e-01 84.1% 78.5%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.53 45.0 3.41e-01 100.0% 77.0%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.52 34.0 3.51e-01 93.7% 70.0%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.44e-01 88.9% 84.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3493388 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 44.0 4.13e-01 95.2% 48.0%
4999971 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 44.0 3.82e-01 77.8% 47.8%
3412176 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.65 59.0 4.51e-01 100.0% 88.6%
4978597 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.63 53.0 3.86e-01 96.8% 69.2%
3698240 109.4.1.1151 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIR3_helical 0.63 51.0 3.27e-01 87.3% 67.1%
5010920 4033.1.1.3 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › HpaB_N 0.62 41.0 3.26e-01 93.7% 31.1%
2754825 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.58 43.0 2.65e-01 100.0% 12.3%
4951621 1075.1.1.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.57 41.0 2.63e-01 76.2% 26.9%
3803063 109.4.1.238 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP_TPR_like 0.57 44.0 2.75e-01 98.4% 15.4%
3258447 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 35.0 3.26e-01 74.6% 48.8%
3168700 109.4.1.442 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › THOC2_N 0.55 41.0 2.57e-01 79.4% 54.8%
3163809 213.1.1.64 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF535 0.54 39.0 2.76e-01 81.0% 73.5%
4992412 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.60e-01 87.3% 63.8%
5019959 101.1.2.728 ↗ alpha arrays › HTH › HTH › winged helix domain › PF31122 0.53 46.0 4.56e-01 98.4% 92.3%
3591799 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.52 39.0 3.86e-01 85.7% 76.9%
3614055 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 45.0 3.18e-01 100.0% 88.1%
3986406 213.1.1.64 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF535 0.52 46.0 3.13e-01 96.8% 48.4%
4253727 109.4.1.835 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INT10 0.51 42.0 2.61e-01 95.2% 32.5%
3339208 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.51 44.0 3.06e-01 100.0% 60.9%
4946903 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.50 37.0 3.49e-01 81.0% 81.2%