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H1c1_full_scaffold_271_prodigal-single.1__X__X__00221
Bact-VirH1c1_full_scaffold_271_prodigal-single.1__X__X__00221
Identity
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
rep: JN882285.1__AFC21976.1__GAP32_516__00529__D3-46
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 48.0 | 4.33e-01 | 73.2% | 58.1% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 59.0 | 5.13e-01 | 98.2% | 95.3% |
| 1wfkA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.66 | 48.0 | 4.30e-01 | 76.8% | 58.4% |
| 2m85A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 44.0 | 4.20e-01 | 76.8% | 64.6% |
| 2ctdA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.56 | 33.0 | 2.86e-01 | 83.9% | 32.3% |
| 2im9A02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.54 | 33.0 | 2.52e-01 | 73.2% | 23.8% |
| 6iccA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 36.0 | 3.20e-01 | 71.4% | 83.7% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 37.0 | 2.78e-01 | 75.0% | 90.4% |
| 3w6wB01 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.53 | 38.0 | 2.27e-01 | 78.6% | 10.7% |
| 2co8A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.50 | 41.0 | 3.65e-01 | 91.1% | 73.2% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3554759 | 376.1.3.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 | 0.78 | 49.0 | 4.81e-01 | 73.2% | 60.0% |
| 3918190 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.75 | 53.0 | 4.10e-01 | 73.2% | 87.0% |
| 3262964 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 65.0 | 5.70e-01 | 98.2% | 96.5% |
| 3214194 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.70 | 52.0 | 4.96e-01 | 78.6% | 73.8% |
| 5041606 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 55.0 | 5.26e-01 | 83.9% | 73.8% |
| 3233807 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 48.0 | 4.47e-01 | 82.1% | 57.1% |
| 3938423 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 51.0 | 5.37e-01 | 89.3% | 89.8% |
| 3485409 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 45.0 | 5.19e-01 | 71.4% | 95.0% |
| 4024577 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.68 | 46.0 | 4.29e-01 | 85.7% | 57.1% |
| 3267870 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.67 | 48.0 | 4.82e-01 | 78.6% | 72.4% |
| 3818617 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.67 | 46.0 | 4.68e-01 | 76.8% | 72.7% |
| 3732738 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.67 | 49.0 | 4.86e-01 | 89.3% | 75.0% |
| 3583761 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.66 | 47.0 | 4.99e-01 | 89.3% | 87.5% |
| 3494950 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.66 | 57.0 | 5.06e-01 | 96.4% | 75.0% |
| 3230559 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 44.0 | 5.10e-01 | 73.2% | 97.5% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.64 | 43.0 | 4.74e-01 | 73.2% | 88.9% |
| 3720371 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 40.0 | 4.37e-01 | 73.2% | 82.2% |
| 3598442 | 376.1.1.78 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 | 0.62 | 39.0 | 4.21e-01 | 71.4% | 80.0% |
| 5019399 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 47.0 | 4.80e-01 | 82.1% | 100.0% |
| 4970980 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 41.0 | 4.04e-01 | 75.0% | 63.5% |
| 4970991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 43.0 | 3.38e-01 | 76.8% | 67.2% |
| 3080542 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.61 | 42.0 | 3.57e-01 | 73.2% | 82.4% |
| 5071881 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 40.0 | 3.92e-01 | 75.0% | 66.7% |
| 4945028 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 46.0 | 4.25e-01 | 91.1% | 67.6% |
| 4562058 | 377.1.1.31 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS | 0.57 | 38.0 | 4.17e-01 | 71.4% | 86.7% |
| 3570260 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 32.0 | 3.15e-01 | 75.0% | 46.7% |
| 4030410 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.56 | 38.0 | 2.41e-01 | 71.4% | 18.0% |
| 3483313 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.56 | 37.0 | 3.81e-01 | 71.4% | 85.5% |
| 3917318 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 31.0 | 3.26e-01 | 73.2% | 54.0% |
| 3411796 | 386.1.1.258 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30020 | 0.54 | 34.0 | 3.61e-01 | 76.8% | 77.8% |
| 3925918 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 37.0 | 3.92e-01 | 73.2% | 94.0% |
| 3540286 | 376.1.2.28 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-FCS | 0.53 | 33.0 | 3.83e-01 | 71.4% | 100.0% |
| 3742973 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.53 | 36.0 | 3.58e-01 | 83.9% | 66.7% |
| 3481328 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.52 | 39.0 | 3.50e-01 | 82.1% | 75.0% |
| 3405528 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 34.0 | 3.58e-01 | 96.4% | 78.0% |
| 3855511 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 35.0 | 3.38e-01 | 78.6% | 61.5% |
| 3886848 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.51 | 34.0 | 3.50e-01 | 73.2% | 78.2% |
| 3489563 | 376.1.2.25 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › FYVE | 0.51 | 36.0 | 3.57e-01 | 91.1% | 73.3% |
| 3413884 | 376.1.5.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger › zf-AN1 | 0.51 | 41.0 | 3.97e-01 | 100.0% | 84.6% |
| 3768981 | 386.1.1.51 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CEP104_ZnF | 0.51 | 34.0 | 3.59e-01 | 85.7% | 80.0% |
D2
high
residues 151-221
Domain cluster:
rep: OK283618.1__UCR92177.1__LPLM1_00042__00042__D87-159
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02945.22 best | Endonuclease_7 | 67.0 | 1.60e-18 | 100.0% | 87.8% |