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H1c1_full_scaffold_271_prodigal-single.1__X__X__00261
Bact-VirH1c1_full_scaffold_271_prodigal-single.1__X__X__00261
Identity
- Kingdom:
- phage
Quality
62.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-101
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.68 | 61.0 | 4.02e-01 | 99.0% | 94.3% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 48.0 | 5.44e-01 | 82.8% | 98.7% |
| 3nv0B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 52.0 | 4.67e-01 | 82.8% | 92.6% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 48.0 | 4.47e-01 | 75.8% | 92.7% |
| 3dukA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 48.0 | 4.44e-01 | 75.8% | 91.2% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 41.0 | 3.72e-01 | 96.0% | 47.7% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 47.0 | 4.40e-01 | 76.8% | 92.8% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 47.0 | 4.30e-01 | 75.8% | 95.3% |
| 7c5wA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 45.0 | 4.00e-01 | 74.7% | 100.0% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 46.0 | 4.25e-01 | 75.8% | 92.9% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 46.0 | 4.28e-01 | 74.7% | 93.5% |
| 3q0xA01 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.63 | 49.0 | 4.24e-01 | 83.8% | 95.5% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 53.0 | 4.76e-01 | 92.9% | 94.2% |
| 3h3hB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 45.0 | 4.29e-01 | 76.8% | 96.7% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.60 | 47.0 | 4.12e-01 | 84.8% | 58.7% |
| 4i2yA01 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.60 | 45.0 | 3.36e-01 | 77.8% | 79.2% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 42.0 | 3.59e-01 | 94.9% | 45.0% |
| 2ckfB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 44.0 | 3.76e-01 | 79.8% | 92.4% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 49.0 | 4.39e-01 | 91.9% | 95.1% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 44.0 | 4.42e-01 | 79.8% | 92.0% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.58 | 43.0 | 3.71e-01 | 79.8% | 75.5% |
| 5i97C00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.58 | 45.0 | 4.03e-01 | 82.8% | 100.0% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 45.0 | 3.89e-01 | 99.0% | 54.2% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 47.0 | 4.12e-01 | 91.9% | 88.3% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 48.0 | 4.10e-01 | 97.0% | 94.4% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 48.0 | 3.31e-01 | 98.0% | 45.4% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 48.0 | 3.46e-01 | 100.0% | 96.9% |
| 7xhlD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 46.0 | 3.27e-01 | 92.9% | 74.5% |
| 2oojA00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.53 | 43.0 | 3.99e-01 | 99.0% | 68.7% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 40.0 | 3.76e-01 | 81.8% | 85.5% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.52 | 43.0 | 4.01e-01 | 100.0% | 69.9% |
| 2g18I00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.52 | 45.0 | 3.43e-01 | 96.0% | 68.5% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 47.0 | 3.29e-01 | 99.0% | 73.5% |
| 5aq1A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 43.0 | 3.24e-01 | 97.0% | 84.6% |
| 2wxwA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 40.0 | 3.44e-01 | 85.9% | 74.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3703649 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.75 | 43.0 | 4.78e-01 | 75.8% | 71.2% |
| 3707862 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.74 | 43.0 | 4.75e-01 | 75.8% | 71.2% |
| 4793345 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.73 | 47.0 | 4.59e-01 | 76.8% | 59.8% |
| 3789885 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.69 | 51.0 | 3.90e-01 | 76.8% | 52.9% |
| 3990149 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.68 | 48.0 | 4.74e-01 | 90.9% | 69.9% |
| 3936550 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.67 | 51.0 | 3.23e-01 | 79.8% | 33.1% |
| 6388 | 243.1.1.22 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 | 0.66 | 48.0 | 4.47e-01 | 75.8% | 92.7% |
| 3289401 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.66 | 49.0 | 4.45e-01 | 76.8% | 74.6% |
| 3237776 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.65 | 49.0 | 3.13e-01 | 78.8% | 29.0% |
| 3501545 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.64 | 48.0 | 3.98e-01 | 94.9% | 45.3% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.64 | 52.0 | 5.10e-01 | 100.0% | 80.0% |
| 3998374 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.64 | 46.0 | 3.70e-01 | 76.8% | 63.5% |
| 3578827 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.64 | 47.0 | 3.78e-01 | 76.8% | 64.3% |
| 4386721 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.63 | 54.0 | 5.18e-01 | 92.9% | 98.3% |
| 3734360 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 53.0 | 4.25e-01 | 90.9% | 72.1% |
| 5040084 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.62 | 50.0 | 4.68e-01 | 85.9% | 76.7% |
| 3938215 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.62 | 54.0 | 4.87e-01 | 97.0% | 99.3% |
| 3212332 | 243.1.1.85 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 | 0.62 | 50.0 | 4.59e-01 | 87.9% | 99.2% |
| 3928747 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.61 | 46.0 | 2.97e-01 | 79.8% | 32.1% |
| 3630137 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.60 | 51.0 | 3.21e-01 | 89.9% | 85.3% |
| 3784777 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.60 | 49.0 | 4.19e-01 | 89.9% | 69.1% |
| 4948942 | 3425.2.1.0 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain | 0.60 | 53.0 | 3.88e-01 | 94.9% | 56.4% |
| 3282030 | 331.3.1.23 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF5914 | 0.59 | 46.0 | 3.84e-01 | 92.9% | 47.4% |
| 3813682 | 5.1.3.260 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2, b-prop_At3g26010-like | 0.59 | 50.0 | 3.52e-01 | 93.9% | 45.3% |
| 3169052 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.58 | 52.0 | 3.34e-01 | 100.0% | 24.8% |
| 4635523 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.58 | 48.0 | 3.48e-01 | 86.9% | 57.3% |
| 4016196 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.58 | 42.0 | 3.84e-01 | 76.8% | 91.1% |
| 4470525 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.58 | 47.0 | 3.49e-01 | 86.9% | 56.3% |
| 3506789 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.58 | 51.0 | 4.26e-01 | 100.0% | 94.3% |
| 4660347 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.56 | 50.0 | 3.56e-01 | 100.0% | 94.8% |
| 4946190 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 47.0 | 4.68e-01 | 99.0% | 89.5% |
| 3581277 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 48.0 | 3.92e-01 | 99.0% | 94.7% |
| 3218497 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.55 | 48.0 | 3.31e-01 | 98.0% | 37.4% |
| 4403418 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.55 | 48.0 | 3.50e-01 | 100.0% | 95.9% |
| 3936893 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 47.0 | 3.66e-01 | 98.0% | 69.1% |
| 3699834 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.54 | 48.0 | 4.45e-01 | 99.0% | 95.2% |
| 3626832 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.54 | 47.0 | 3.15e-01 | 100.0% | 38.6% |
| 3622176 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.54 | 46.0 | 3.06e-01 | 98.0% | 35.6% |
| 4611906 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.54 | 40.0 | 3.65e-01 | 80.8% | 90.0% |
| 3215628 | 206.1.1.44 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 | 0.54 | 44.0 | 3.04e-01 | 90.9% | 70.0% |
| 3993127 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 3.05e-01 | 98.0% | 82.6% |
| 3798952 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.53 | 45.0 | 3.63e-01 | 98.0% | 81.0% |
| 3255190 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 46.0 | 4.58e-01 | 97.0% | 94.1% |
| 3611209 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 44.0 | 3.41e-01 | 97.0% | 41.3% |
| 3846584 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 41.0 | 3.49e-01 | 88.9% | 72.6% |
| 3883756 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 41.0 | 3.12e-01 | 89.9% | 87.2% |
D2
high
residues 103-180