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H1c1_full_scaffold_271_prodigal-single.1__X__X__00321
Bact-VirH1c1_full_scaffold_271_prodigal-single.1__X__X__00321
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-204
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00271__D25-165
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.86 | 61.0 | 6.86e-01 | 100.0% | 90.4% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.84 | 68.0 | 7.17e-01 | 100.0% | 91.6% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.79 | 62.0 | 6.62e-01 | 100.0% | 93.2% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.77 | 64.0 | 6.83e-01 | 100.0% | 97.3% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.76 | 67.0 | 6.72e-01 | 100.0% | 90.7% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.75 | 56.0 | 5.89e-01 | 100.0% | 84.5% |
| 2f1vA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.71 | 67.0 | 6.56e-01 | 100.0% | 92.9% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.69 | 47.0 | 4.77e-01 | 100.0% | 70.6% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.68 | 64.0 | 6.00e-01 | 100.0% | 94.1% |
| 2vdfA00 | 2.40.128.100 | Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin | 0.66 | 61.0 | 5.51e-01 | 100.0% | 96.4% |
| 1i78B00 | 2.40.128.90 | Mainly Beta › Beta Barrel › Lipocalin › OMPT-like | 0.65 | 60.0 | 5.00e-01 | 100.0% | 94.1% |
| 2obdA02 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.65 | 48.0 | 4.69e-01 | 76.9% | 92.1% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.64 | 40.0 | 4.07e-01 | 72.8% | 62.4% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 37.0 | 4.32e-01 | 93.5% | 83.5% |
| 1bp1A01 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.61 | 46.0 | 4.51e-01 | 77.5% | 97.2% |
| 6eheA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.60 | 48.0 | 3.93e-01 | 99.4% | 46.8% |
| 4fuvA00 | 2.40.160.170 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 55.0 | 5.08e-01 | 100.0% | 93.9% |
| 6wilA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.58 | 47.0 | 3.66e-01 | 84.0% | 59.5% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.58 | 45.0 | 3.24e-01 | 79.3% | 38.2% |
| 3kspA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 38.0 | 4.26e-01 | 91.7% | 86.0% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.57 | 53.0 | 4.51e-01 | 100.0% | 97.0% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.57 | 53.0 | 4.62e-01 | 100.0% | 94.4% |
| 5fokA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.57 | 43.0 | 3.06e-01 | 79.3% | 40.8% |
| 2w16A03 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.57 | 43.0 | 3.03e-01 | 79.3% | 26.3% |
| 3dwoX00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.56 | 51.0 | 3.80e-01 | 99.4% | 70.7% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.56 | 45.0 | 3.64e-01 | 82.8% | 85.4% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.55 | 51.0 | 4.22e-01 | 100.0% | 99.0% |
| 4c4vB02 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.55 | 49.0 | 3.84e-01 | 97.6% | 97.0% |
| 1af6A00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.55 | 45.0 | 3.38e-01 | 87.6% | 94.5% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 35.0 | 3.85e-01 | 93.5% | 80.5% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.54 | 50.0 | 3.73e-01 | 100.0% | 97.3% |
| 4k3bA06 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.52 | 48.0 | 3.73e-01 | 100.0% | 97.6% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 27.0 | 3.48e-01 | 89.3% | 89.5% |
| 6wimA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.51 | 47.0 | 3.62e-01 | 98.8% | 96.4% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.51 | 31.0 | 3.51e-01 | 92.9% | 79.2% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 35.0 | 3.84e-01 | 95.3% | 87.9% |
| 1xkwA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.51 | 42.0 | 2.97e-01 | 88.8% | 62.7% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4099548 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.84 | 68.0 | 7.26e-01 | 100.0% | 94.7% |
| 4683047 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.82 | 72.0 | 7.37e-01 | 100.0% | 92.7% |
| None | — | 0.79 | 62.0 | 6.62e-01 | 100.0% | 93.2% | |
| 4224449 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.78 | 72.0 | 7.15e-01 | 100.0% | 92.0% |
| 4042627 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.77 | 69.0 | 7.00e-01 | 100.0% | 94.0% |
| 3164124 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.76 | 53.0 | 6.21e-01 | 82.2% | 100.0% |
| 4197411 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.74 | 71.0 | 6.67e-01 | 100.0% | 91.5% |
| 3838321 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.74 | 70.0 | 6.37e-01 | 100.0% | 92.2% |
| 5027751 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.73 | 59.0 | 6.30e-01 | 100.0% | 95.3% |
| 3164538 | 5084.1.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane | 0.73 | 69.0 | 6.58e-01 | 100.0% | 91.8% |
| 3839724 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.71 | 68.0 | 6.03e-01 | 100.0% | 94.4% |
| 4301927 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.71 | 67.0 | 5.98e-01 | 100.0% | 91.3% |
| 4331617 | 5084.1.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpW | 0.70 | 67.0 | 6.50e-01 | 100.0% | 96.2% |
| 5080405 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.70 | 51.0 | 5.25e-01 | 80.5% | 78.0% |
| 4172098 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.69 | 66.0 | 6.16e-01 | 100.0% | 95.0% |
| 3839690 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.69 | 64.0 | 6.13e-01 | 100.0% | 96.9% |
| 3837948 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.69 | 64.0 | 6.17e-01 | 100.0% | 90.0% |
| 3838164 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.67 | 64.0 | 6.22e-01 | 100.0% | 95.7% |
| 5081121 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.64 | 59.0 | 5.84e-01 | 100.0% | 94.9% |
| 3965061 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 51.0 | 4.43e-01 | 86.4% | 60.0% |
| 4652602 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.61 | 55.0 | 4.48e-01 | 98.8% | 95.6% |
| 4039744 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.61 | 56.0 | 4.48e-01 | 99.4% | 92.6% |
| 4069053 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.60 | 42.0 | 3.38e-01 | 99.4% | 37.2% |
| 3782878 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.59 | 47.0 | 3.66e-01 | 82.2% | 74.9% |
| 2834683 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.59 | 47.0 | 3.60e-01 | 82.8% | 51.3% |
| 3965708 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.59 | 41.0 | 3.67e-01 | 81.7% | 49.6% |
| 3979621 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.58 | 54.0 | 4.42e-01 | 100.0% | 94.1% |
| 4256431 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.58 | 44.0 | 3.12e-01 | 78.1% | 32.2% |
| 3964572 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.58 | 54.0 | 4.43e-01 | 100.0% | 87.0% |
| 3164364 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.57 | 54.0 | 4.45e-01 | 100.0% | 89.6% |
| 4669999 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.57 | 53.0 | 4.33e-01 | 100.0% | 90.8% |
| 4234836 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.57 | 52.0 | 4.31e-01 | 100.0% | 82.6% |
| 3964265 | 5084.1.1.43 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Autotransporter | 0.57 | 45.0 | 4.78e-01 | 82.2% | 99.3% |
| 4490044 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.57 | 53.0 | 4.39e-01 | 100.0% | 84.2% |
| 2755875 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.56 | 42.0 | 2.95e-01 | 78.7% | 30.3% |
| 3515197 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.55 | 39.0 | 3.96e-01 | 94.1% | 71.8% |
| 3787225 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.55 | 44.0 | 4.22e-01 | 93.5% | 73.3% |
| 3969681 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.55 | 51.0 | 4.20e-01 | 100.0% | 85.1% |
| 4150627 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.55 | 50.0 | 4.11e-01 | 100.0% | 85.1% |
| 4602917 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.54 | 50.0 | 4.00e-01 | 99.4% | 76.7% |
| 3515710 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.54 | 46.0 | 3.70e-01 | 91.1% | 96.7% |
| 3941832 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.54 | 44.0 | 3.41e-01 | 86.4% | 63.2% |
| 890 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.54 | 42.0 | 3.33e-01 | 80.5% | 41.2% |
| 3968316 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.54 | 50.0 | 3.63e-01 | 99.4% | 97.8% |
| 3055859 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.53 | 40.0 | 2.60e-01 | 78.7% | 32.5% |
| 3736480 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 40.0 | 4.20e-01 | 92.3% | 87.7% |
| 4027955 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.52 | 48.0 | 3.73e-01 | 100.0% | 98.1% |
| 3506543 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.52 | 47.0 | 3.47e-01 | 98.8% | 93.9% |
| 3967717 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.52 | 40.0 | 3.24e-01 | 79.9% | 86.7% |
| 3966457 | 5084.5.2.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like | 0.52 | 47.0 | 3.39e-01 | 97.6% | 92.6% |
| 4184524 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.52 | 46.0 | 3.68e-01 | 97.0% | 96.8% |
| 4603160 | 5084.5.4.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › YaiO | 0.51 | 47.0 | 4.17e-01 | 98.2% | 95.7% |
| 3064472 | 5084.5.2.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › Alginate_exp | 0.51 | 46.0 | 3.37e-01 | 98.2% | 97.4% |
| 4591311 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.51 | 43.0 | 2.78e-01 | 88.8% | 78.3% |
| 1718522 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.51 | 42.0 | 2.97e-01 | 88.8% | 62.8% |
| 4066147 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.50 | 47.0 | 3.70e-01 | 100.0% | 94.3% |