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H1c1_full_scaffold_271_prodigal-single.1__X__X__00391
Bact-VirH1c1_full_scaffold_271_prodigal-single.1__X__X__00391
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-23_79-144
D2
medium
residues 24-78
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kflA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.73 | 53.0 | 4.10e-01 | 78.2% | 37.2% |
| 1vd4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.72 | 54.0 | 5.27e-01 | 81.8% | 72.6% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.68 | 47.0 | 4.99e-01 | 83.6% | 85.1% |
| 1yc5A02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.65 | 54.0 | 4.82e-01 | 98.2% | 79.8% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.64 | 42.0 | 4.67e-01 | 80.0% | 100.0% |
| 5trbA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 46.0 | 4.27e-01 | 78.2% | 65.2% |
| 2cklB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 46.0 | 4.25e-01 | 80.0% | 67.6% |
| 2ma6A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 43.0 | 4.21e-01 | 78.2% | 70.5% |
| 4tn3A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 35.0 | 3.83e-01 | 78.2% | 75.0% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 42.0 | 4.19e-01 | 80.0% | 76.3% |
| 1ffvC03 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.58 | 47.0 | 3.87e-01 | 98.2% | 54.4% |
| 6nw1A00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 40.0 | 4.32e-01 | 76.4% | 100.0% |
| 2zuoA08 | 2.30.30.620 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 40.0 | 3.96e-01 | 90.9% | 69.0% |
| 2yfoA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 46.0 | 3.87e-01 | 94.5% | 97.9% |
| 4nu0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 37.0 | 2.52e-01 | 80.0% | 18.4% |
| 2xn2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 46.0 | 3.90e-01 | 98.2% | 97.9% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.54 | 42.0 | 3.92e-01 | 96.4% | 89.6% |
| 2g3mA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 42.0 | 3.82e-01 | 94.5% | 65.3% |
| 4r7eA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 37.0 | 3.54e-01 | 78.2% | 65.2% |
| 2zuvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.57e-01 | 98.2% | 71.7% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3881978 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 51.0 | 4.09e-01 | 81.8% | 35.0% |
| 4995670 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 45.0 | 5.11e-01 | 76.4% | 80.0% |
| 4607892 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 48.0 | 5.46e-01 | 78.2% | 87.5% |
| 4952487 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 47.0 | 5.11e-01 | 78.2% | 77.8% |
| 3430608 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 56.0 | 5.49e-01 | 81.8% | 75.0% |
| 4795496 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.74 | 56.0 | 5.16e-01 | 81.8% | 67.1% |
| 3255511 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.73 | 54.0 | 3.70e-01 | 80.0% | 24.2% |
| 3518157 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 52.0 | 5.40e-01 | 80.0% | 84.0% |
| 4029392 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.73 | 54.0 | 3.70e-01 | 80.0% | 23.8% |
| 3783244 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.72 | 53.0 | 3.54e-01 | 80.0% | 20.4% |
| 8014 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.72 | 54.0 | 5.27e-01 | 81.8% | 72.6% |
| 4645846 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.72 | 48.0 | 3.39e-01 | 80.0% | 22.4% |
| 3488429 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.72 | 52.0 | 3.58e-01 | 78.2% | 24.9% |
| None | — | 0.72 | 53.0 | 3.65e-01 | 80.0% | 23.8% | |
| 4218543 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 48.0 | 5.29e-01 | 74.5% | 97.5% |
| 5042462 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.71 | 49.0 | 3.47e-01 | 80.0% | 24.2% |
| 5080684 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.71 | 46.0 | 3.36e-01 | 80.0% | 23.9% |
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 52.0 | 3.61e-01 | 80.0% | 23.8% |
| 3394822 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.71 | 52.0 | 3.57e-01 | 80.0% | 22.6% |
| 4929289 | 375.1.1.329 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TackOD1 | 0.71 | 52.0 | 4.98e-01 | 80.0% | 90.8% |
| 4004118 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.71 | 52.0 | 3.61e-01 | 80.0% | 23.8% |
| 4944282 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 46.0 | 5.14e-01 | 80.0% | 92.5% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 49.0 | 3.26e-01 | 80.0% | 19.5% |
| 3485716 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.70 | 51.0 | 3.56e-01 | 80.0% | 24.7% |
| 4241167 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.70 | 48.0 | 3.39e-01 | 80.0% | 23.5% |
| 3670750 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 52.0 | 4.02e-01 | 80.0% | 37.5% |
| 3465479 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.70 | 52.0 | 3.31e-01 | 80.0% | 17.3% |
| 3277094 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.70 | 40.0 | 4.20e-01 | 70.9% | 62.0% |
| 4361081 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 49.0 | 5.24e-01 | 80.0% | 93.3% |
| 3938245 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.70 | 51.0 | 3.46e-01 | 80.0% | 21.5% |
| 3223233 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.69 | 51.0 | 3.37e-01 | 80.0% | 19.1% |
| 4329890 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.69 | 47.0 | 3.42e-01 | 80.0% | 26.0% |
| 4338085 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 48.0 | 5.10e-01 | 80.0% | 88.9% |
| 3627228 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 51.0 | 5.31e-01 | 80.0% | 88.0% |
| 4344487 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.69 | 47.0 | 3.37e-01 | 80.0% | 24.2% |
| 4546356 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 47.0 | 4.11e-01 | 80.0% | 47.1% |
| 4403519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 45.0 | 3.23e-01 | 80.0% | 22.4% |
| 4507638 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.68 | 47.0 | 3.35e-01 | 80.0% | 24.2% |
| 3825960 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.67 | 50.0 | 5.45e-01 | 80.0% | 97.8% |
| 4478999 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.67 | 46.0 | 3.25e-01 | 80.0% | 23.1% |
| 3815405 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.67 | 50.0 | 4.24e-01 | 80.0% | 80.0% |
| 4979655 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.66 | 50.0 | 3.82e-01 | 81.8% | 62.4% |
| 3929687 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.66 | 46.0 | 4.46e-01 | 78.2% | 64.6% |
| 5072192 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.65 | 44.0 | 4.77e-01 | 83.6% | 88.9% |
| 3217237 | 375.1.1.18 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 | 0.64 | 53.0 | 4.43e-01 | 98.2% | 91.4% |
| 4456198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 45.0 | 3.15e-01 | 81.8% | 22.2% |
| 3770164 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.62 | 44.0 | 3.95e-01 | 80.0% | 60.0% |
| 3595519 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 44.0 | 4.24e-01 | 78.2% | 67.7% |
| 3612520 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.61 | 44.0 | 3.45e-01 | 78.2% | 35.2% |
| 3718581 | 386.1.1.114 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C3HC4_2 | 0.61 | 45.0 | 3.60e-01 | 80.0% | 42.7% |
| 3263784 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 47.0 | 3.25e-01 | 83.6% | 33.7% |
| 5054122 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.60 | 41.0 | 3.02e-01 | 81.8% | 25.0% |
| 3715448 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.60 | 42.0 | 3.22e-01 | 78.2% | 30.0% |
| 5082704 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.59 | 40.0 | 2.83e-01 | 81.8% | 20.5% |
| 4646072 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.59 | 40.0 | 2.91e-01 | 81.8% | 23.5% |
| 4974744 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.59 | 41.0 | 2.91e-01 | 80.0% | 23.4% |
| 3708552 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.58 | 42.0 | 3.91e-01 | 80.0% | 61.3% |
| 5039984 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.57 | 41.0 | 2.94e-01 | 81.8% | 25.5% |
| 3393739 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.57 | 40.0 | 4.21e-01 | 80.0% | 95.6% |
| 3469416 | 101.19.1.1 ↗ | alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C | 0.56 | 47.0 | 3.94e-01 | 100.0% | 66.7% |
| 3689410 | 109.4.1.1856 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD_2nd | 0.56 | 37.0 | 2.37e-01 | 85.5% | 11.8% |
| 4225090 | 2002.1.1.160 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Lact_bio_phlase | 0.52 | 44.0 | 2.67e-01 | 100.0% | 41.6% |