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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00001
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00001
Identity
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-45
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f8hC00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.85 | 73.0 | 5.73e-01 | 100.0% | 47.3% |
| 2ebyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.84 | 74.0 | 6.05e-01 | 100.0% | 55.7% |
| 3cecA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.84 | 73.0 | 5.72e-01 | 100.0% | 48.4% |
| 2ictA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.84 | 75.0 | 6.03e-01 | 100.0% | 54.3% |
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 55.0 | 5.34e-01 | 79.1% | 70.8% |
| 2mg4A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 59.0 | 5.24e-01 | 93.0% | 65.2% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 60.0 | 5.86e-01 | 93.0% | 87.2% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 48.0 | 4.49e-01 | 74.4% | 55.2% |
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 50.0 | 4.46e-01 | 83.7% | 52.2% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.69 | 50.0 | 3.92e-01 | 81.4% | 35.4% |
| 2p0wA03 | 1.10.10.390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.67 | 56.0 | 5.30e-01 | 100.0% | 83.3% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.65 | 52.0 | 3.30e-01 | 90.7% | 20.4% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 55.0 | 4.59e-01 | 100.0% | 81.8% |
| 1y9qA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 47.0 | 3.87e-01 | 83.7% | 43.5% |
| 1irzA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 53.0 | 4.75e-01 | 100.0% | 67.2% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.63 | 50.0 | 4.38e-01 | 97.7% | 56.5% |
| 4ryaA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 53.0 | 3.45e-01 | 100.0% | 73.9% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.61 | 50.0 | 3.95e-01 | 95.3% | 98.0% |
| 5iaiA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.61 | 48.0 | 3.21e-01 | 97.7% | 71.0% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 48.0 | 4.25e-01 | 86.0% | 63.9% |
| 2nnwA01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 47.0 | 3.48e-01 | 93.0% | 73.0% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.58 | 43.0 | 4.35e-01 | 81.4% | 87.8% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 48.0 | 3.34e-01 | 100.0% | 74.2% |
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.55 | 47.0 | 3.22e-01 | 100.0% | 53.4% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.78e-01 | 81.4% | 72.9% |
| 4uqvF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 40.0 | 2.92e-01 | 97.7% | 77.2% |
| 2p67A01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 41.0 | 3.91e-01 | 97.7% | 100.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4300595 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.89 | 79.0 | 6.06e-01 | 100.0% | 46.3% |
| 430036 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.86 | 76.0 | 5.89e-01 | 100.0% | 47.8% |
| 2777 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.84 | 75.0 | 5.89e-01 | 100.0% | 50.6% |
| 3997742 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.80 | 67.0 | 5.60e-01 | 95.3% | 78.7% |
| 3327057 | 101.1.1.298 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7645 | 0.78 | 67.0 | 6.05e-01 | 97.7% | 73.3% |
| 3881453 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.75 | 65.0 | 5.57e-01 | 100.0% | 62.9% |
| 3768463 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 64.0 | 5.74e-01 | 100.0% | 73.3% |
| 3249062 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.71 | 58.0 | 4.65e-01 | 95.3% | 84.4% |
| 4944767 | 101.1.2.883 ↗ | alpha arrays › HTH › HTH › winged helix domain › Radical_SAM | 0.66 | 54.0 | 4.66e-01 | 97.7% | 89.3% |
| 4933160 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.66 | 55.0 | 3.54e-01 | 93.0% | 39.0% |
| 3829115 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.65 | 55.0 | 4.87e-01 | 97.7% | 64.6% |
| 3843122 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.65 | 52.0 | 4.39e-01 | 100.0% | 91.8% |
| 3319387 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.65 | 48.0 | 3.15e-01 | 86.0% | 18.8% |
| 4088578 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.65 | 52.0 | 4.62e-01 | 93.0% | 80.0% |
| 4078112 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.61 | 48.0 | 4.19e-01 | 100.0% | 57.0% |
| 5058906 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 48.0 | 4.08e-01 | 97.7% | 70.0% |
| 3954937 | 103.2.1.1 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN | 0.59 | 40.0 | 3.45e-01 | 76.7% | 40.0% |