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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00039
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00039
Identity
- Kingdom:
- phage
Quality
81.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-78
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l2pA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.60 | 41.0 | 3.47e-01 | 71.2% | 74.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5049822 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 42.0 | 5.21e-01 | 76.7% | 97.8% |
| 5024194 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.60 | 46.0 | 4.62e-01 | 80.8% | 80.0% |
| 3843762 | 5086.1.1.227 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › zf-B_box, TRIM_CC | 0.59 | 32.0 | 2.33e-01 | 83.6% | 17.6% |
| 4943668 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.57 | 44.0 | 4.08e-01 | 80.8% | 70.0% |
| 4882736 | 377.1.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e | 0.56 | 43.0 | 3.98e-01 | 82.2% | 81.7% |
| 3882034 | 904.1.1.22 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box, TRIM_CC | 0.56 | 30.0 | 2.29e-01 | 83.6% | 19.5% |
| 3930314 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 37.0 | 3.44e-01 | 75.3% | 89.0% |
| 4955752 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.52 | 37.0 | 2.73e-01 | 75.3% | 84.0% |