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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00055

Bact-Vir

H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00055

Identity

Kingdom:
phage

Quality

76.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-55
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.92 84.0 6.92e-01 100.0% 59.0%
2dsyD00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.87 79.0 6.66e-01 100.0% 61.7%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.84 72.0 6.33e-01 92.0% 72.9%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.81 73.0 5.61e-01 100.0% 49.5%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.81 71.0 5.80e-01 96.0% 56.8%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.80 67.0 5.96e-01 92.0% 72.9%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.79 71.0 6.41e-01 100.0% 74.6%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.79 66.0 5.78e-01 92.0% 74.3%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 66.0 5.26e-01 96.0% 63.4%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.78 69.0 5.59e-01 100.0% 55.8%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.77 66.0 5.49e-01 96.0% 58.0%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 66.0 5.02e-01 96.0% 49.1%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 61.0 5.51e-01 88.0% 75.0%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.75 62.0 5.63e-01 96.0% 67.6%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 59.0 5.42e-01 92.0% 66.7%
4p78A00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 62.0 5.33e-01 100.0% 57.0%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 60.0 4.40e-01 100.0% 34.6%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.73 50.0 2.93e-01 72.0% 10.2%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 41.0 2.95e-01 80.0% 20.6%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 3.38e-01 90.0% 24.8%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 48.0 2.99e-01 72.0% 22.4%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 54.0 5.25e-01 90.0% 86.2%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.68 48.0 2.94e-01 78.0% 11.9%
2r1fA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.64 46.0 5.01e-01 98.0% 94.9%
2b5eA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 44.0 3.61e-01 74.0% 79.4%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.61 43.0 3.93e-01 76.0% 97.1%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 42.0 3.25e-01 76.0% 33.1%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.60 47.0 3.83e-01 96.0% 75.2%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.71e-01 88.0% 92.2%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 51.0 3.18e-01 100.0% 29.2%
1g29103 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 43.0 3.94e-01 78.0% 100.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 46.0 4.43e-01 92.0% 78.9%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.57 42.0 3.49e-01 84.0% 71.1%
1l1qA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 46.0 3.14e-01 90.0% 71.3%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 39.0 3.26e-01 76.0% 66.3%
3mmyB00 1.10.10.2360 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 28.0 2.85e-01 98.0% 49.0%
2fd6A01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.55 36.0 3.81e-01 98.0% 84.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.45e-01 100.0% 45.7%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.54 43.0 3.44e-01 88.0% 52.8%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 39.0 3.16e-01 78.0% 67.0%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.13e-01 86.0% 52.0%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.53 38.0 3.26e-01 78.0% 92.1%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 48.0 3.50e-01 100.0% 65.4%
2c47A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 35.0 3.25e-01 72.0% 95.9%
8p2bA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 41.0 3.50e-01 84.0% 60.0%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 38.0 2.79e-01 86.0% 35.2%
4pwyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 2.81e-01 96.0% 19.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992542 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.90 82.0 7.91e-01 100.0% 90.9%
4966362 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.89 82.0 7.22e-01 100.0% 72.9%
5015133 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.89 74.0 6.96e-01 96.0% 75.0%
4634689 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.89 80.0 7.26e-01 100.0% 75.4%
4948406 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.89 78.0 7.19e-01 98.0% 76.2%
4431929 4100.1.1.4 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.87 76.0 7.01e-01 100.0% 75.4%
5048895 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.87 77.0 7.23e-01 100.0% 81.7%
4969332 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.87 77.0 7.22e-01 100.0% 81.7%
4966261 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.86 75.0 6.92e-01 100.0% 75.4%
5029920 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.86 74.0 6.71e-01 96.0% 72.3%
4011588 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.86 77.0 6.63e-01 98.0% 72.0%
4950216 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.86 65.0 6.66e-01 84.0% 85.4%
4967355 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.85 73.0 6.74e-01 100.0% 73.8%
4649870 4100.1.1.4 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.85 77.0 7.02e-01 100.0% 76.9%
4929701 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.85 73.0 6.83e-01 96.0% 78.3%
4959884 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.84 71.0 6.88e-01 96.0% 83.6%
5075488 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.83 73.0 6.61e-01 98.0% 72.1%
4965851 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.83 69.0 6.67e-01 92.0% 81.8%
3994593 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.83 75.0 6.34e-01 100.0% 66.3%
5028523 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.83 73.0 6.69e-01 100.0% 78.5%
3964270 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.81 70.0 5.77e-01 100.0% 54.4%
5002624 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.81 68.0 6.14e-01 96.0% 68.6%
5048184 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.80 70.0 5.81e-01 100.0% 57.8%
1346560 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.77 63.0 5.25e-01 100.0% 52.2%
4454794 4207.1.2.0 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.75 48.0 3.31e-01 88.0% 22.0%
3610595 3131.1.1.3 a+b two layers › FYR domain › FYR domain › FYR domain › FYRC 0.74 60.0 4.40e-01 92.0% 36.2%
4028660 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.73 39.0 3.83e-01 78.0% 45.5%
4945596 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.73 54.0 5.68e-01 82.0% 91.1%
3298796 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.69 60.0 4.39e-01 100.0% 36.6%
3969097 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.69 58.0 5.89e-01 98.0% 98.0%
4030063 243.4.1.0 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.68 44.0 2.88e-01 90.0% 16.4%
4289599 4100.1.1.5 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.67 55.0 5.08e-01 100.0% 71.4%
3622767 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 47.0 3.97e-01 90.0% 43.2%
3675633 902.1.1.0 few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.65 43.0 4.64e-01 82.0% 89.7%
3502426 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.64 45.0 3.83e-01 76.0% 95.3%
3947081 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.62 54.0 4.99e-01 96.0% 95.3%
4091244 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.62 50.0 3.80e-01 90.0% 40.0%
3248822 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.60 48.0 3.17e-01 86.0% 69.6%
4471334 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 53.0 3.11e-01 100.0% 72.6%
4997587 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.59 49.0 3.70e-01 98.0% 57.8%
3518950 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.59 43.0 3.59e-01 80.0% 43.2%
3518993 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 37.0 4.14e-01 70.0% 91.4%
3508121 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.58 43.0 3.20e-01 82.0% 37.1%
3915679 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.58 53.0 3.79e-01 100.0% 70.7%
3518153 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.57 43.0 3.37e-01 82.0% 63.6%
3934643 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.57 44.0 3.56e-01 84.0% 65.3%
3776029 3338.1.1.0 a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain 0.56 40.0 3.36e-01 90.0% 39.8%
3715091 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.56 50.0 4.53e-01 100.0% 73.8%
3502261 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.56 42.0 3.13e-01 82.0% 37.0%
3407322 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.55 42.0 3.40e-01 100.0% 42.0%
3412307 7585.1.1.0 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins 0.55 37.0 2.73e-01 74.0% 23.2%
3416823 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 43.0 4.02e-01 90.0% 70.8%
3393851 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.50 35.0 2.72e-01 82.0% 26.9%
4054805 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.50 37.0 2.61e-01 80.0% 74.1%
3301519 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.50 39.0 3.31e-01 84.0% 91.3%