Back to structures

H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00070

Bact-Vir

H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00070

Identity

Kingdom:
phage

Quality

90.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-95_185-216
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.50 34.0 3.95e-01 98.4% 100.0%
7z7vF03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.50 34.0 3.93e-01 96.1% 98.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3714091 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 32.0 4.07e-01 88.2% 97.3%
3906123 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 26.0 2.76e-01 79.5% 47.0%
D2 medium residues 96-184
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 42.0 5.45e-01 84.3% 100.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.72 66.0 4.92e-01 100.0% 49.5%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 5.08e-01 83.1% 89.8%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 58.0 5.13e-01 100.0% 61.6%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 64.0 5.01e-01 100.0% 56.8%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 43.0 4.97e-01 87.6% 87.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 4.82e-01 92.1% 78.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 43.0 5.28e-01 89.9% 100.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 36.0 4.90e-01 82.0% 100.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.68 63.0 4.68e-01 100.0% 42.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 4.82e-01 93.3% 85.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 39.0 4.90e-01 96.6% 98.1%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.67 45.0 3.57e-01 88.8% 34.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 37.0 4.80e-01 93.3% 100.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.60e-01 89.9% 81.2%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 56.0 4.73e-01 100.0% 59.6%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 5.09e-01 91.0% 86.9%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 56.0 4.91e-01 100.0% 66.4%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.62 36.0 3.66e-01 93.3% 56.7%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 4.38e-01 77.5% 100.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.61 43.0 3.98e-01 85.4% 59.6%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 4.25e-01 93.3% 71.9%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 49.0 4.07e-01 94.4% 98.3%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.60 47.0 4.11e-01 86.5% 87.8%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.59 45.0 4.59e-01 80.9% 100.0%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.59 47.0 3.66e-01 86.5% 62.6%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 41.0 3.96e-01 71.9% 89.9%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 46.0 4.43e-01 87.6% 100.0%
1r6vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 34.0 3.14e-01 88.8% 46.4%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 3.06e-01 73.0% 89.2%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 45.0 4.05e-01 86.5% 91.0%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 3.31e-01 74.2% 76.9%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.55 44.0 4.60e-01 86.5% 98.7%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.77e-01 91.0% 73.4%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.04e-01 91.0% 80.3%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 4.27e-01 93.3% 96.3%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.41e-01 96.6% 76.8%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.86e-01 91.0% 70.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.33e-01 88.8% 86.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.76e-01 92.1% 98.6%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 41.0 3.81e-01 85.4% 79.8%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.35e-01 93.3% 66.8%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 3.11e-01 100.0% 68.6%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.72e-01 85.4% 76.1%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.79e-01 95.5% 87.6%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 4.01e-01 93.3% 88.6%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 41.0 3.83e-01 86.5% 96.4%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.57e-01 84.3% 88.3%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 40.0 3.61e-01 86.5% 79.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3740753 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.73 41.0 4.79e-01 84.3% 76.9%
4027422 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 43.0 5.22e-01 86.5% 94.5%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 44.0 5.41e-01 87.6% 98.2%
3709029 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 45.0 5.30e-01 87.6% 93.3%
3326980 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 42.0 5.02e-01 86.5% 88.3%
3398093 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.71 45.0 5.43e-01 89.9% 96.7%
3570399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.41e-01 91.0% 95.4%
4629022 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.70 42.0 4.72e-01 86.5% 77.1%
4261492 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 58.0 4.98e-01 100.0% 58.5%
3606829 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 63.0 4.79e-01 100.0% 49.8%
3373330 4.1.1.337 beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.69 46.0 4.93e-01 93.3% 80.0%
3591737 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 63.0 4.98e-01 100.0% 57.3%
3649741 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 43.0 4.66e-01 91.0% 74.7%
3617111 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 44.0 4.43e-01 94.4% 64.4%
3407089 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 45.0 4.75e-01 93.3% 75.0%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 42.0 5.13e-01 96.6% 100.0%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.66e-01 89.9% 71.8%
3229601 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 40.0 4.70e-01 85.4% 86.7%
3238405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 41.0 4.95e-01 86.5% 98.2%
3900017 4.1.1.284 beta barrels › SH3 › SH3 › SH3 › SBNO 0.68 44.0 3.94e-01 88.8% 48.3%
3279614 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.67 63.0 5.13e-01 100.0% 58.7%
4030940 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.67 61.0 5.06e-01 100.0% 57.4%
3389169 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 45.0 4.57e-01 95.5% 71.8%
4680746 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.66 46.0 4.97e-01 86.5% 85.3%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 44.0 4.39e-01 92.1% 66.7%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.66 54.0 5.09e-01 100.0% 74.3%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.66 47.0 5.10e-01 85.4% 88.0%
2570822 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.65 57.0 4.78e-01 100.0% 57.9%
3358753 4.1.1.381 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.65 44.0 3.62e-01 94.4% 38.2%
4002896 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 43.0 4.37e-01 93.3% 68.9%
4317167 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.63 47.0 4.93e-01 93.3% 87.5%
4645538 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.63 43.0 4.64e-01 89.9% 82.7%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 45.0 4.61e-01 95.5% 77.6%
3387378 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 49.0 5.02e-01 91.0% 88.2%
3385461 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 57.0 4.78e-01 100.0% 61.4%
3642001 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 44.0 4.94e-01 86.5% 95.7%
2389702 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.61 44.0 4.11e-01 76.4% 93.0%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 5.05e-01 95.5% 96.2%
3945059 9.1.1.6 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.61 50.0 4.75e-01 89.9% 95.2%
3886032 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.60 49.0 4.67e-01 87.6% 91.4%
3277840 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 43.0 3.30e-01 74.2% 47.5%
4026957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.64e-01 91.0% 100.0%
5023947 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.60 41.0 3.35e-01 71.9% 48.2%
4952498 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.59 47.0 4.62e-01 100.0% 77.8%
3950458 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.59 43.0 3.44e-01 76.4% 53.9%
3248403 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 41.0 3.55e-01 73.0% 80.0%
4565837 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 49.0 4.86e-01 100.0% 92.6%
3354387 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.55 46.0 4.69e-01 89.9% 94.1%
3619467 220.1.1.84 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.55 43.0 4.02e-01 85.4% 80.9%
3763814 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.54 45.0 3.94e-01 91.0% 71.1%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.54e-01 87.6% 91.8%
3576219 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.54 45.0 3.82e-01 91.0% 71.0%
3797485 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 3.97e-01 91.0% 79.2%
3515143 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.53 43.0 3.85e-01 87.6% 81.6%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 44.0 3.27e-01 91.0% 40.0%
3586192 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.53 37.0 3.95e-01 84.3% 88.0%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.27e-01 91.0% 41.4%
3928711 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.41e-01 91.0% 100.0%
77 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.51 41.0 3.84e-01 86.5% 97.3%
3722618 10.1.1.26 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.50 41.0 3.44e-01 93.3% 82.9%
3768094 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 45.0 4.24e-01 96.6% 82.9%