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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00125

Bact-Vir

H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00125

Identity

Kingdom:
phage

Quality

83.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-71
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.70 46.0 4.44e-01 77.5% 60.0%
1q2zA00 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.68 60.0 5.03e-01 97.2% 71.7%
4fxdA06 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.68 57.0 4.38e-01 93.0% 93.8%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.66 54.0 4.99e-01 88.7% 78.4%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 52.0 4.71e-01 87.3% 79.6%
1kf6A03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.65 53.0 4.45e-01 88.7% 62.5%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 45.0 4.78e-01 93.0% 86.9%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.62 50.0 3.93e-01 90.1% 61.5%
2ebzA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.62 47.0 4.54e-01 93.0% 71.6%
3s0xA01 1.20.120.1220 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 45.0 3.66e-01 80.3% 85.0%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.62 51.0 5.10e-01 95.8% 87.8%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.61 53.0 4.39e-01 100.0% 87.4%
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 52.0 3.94e-01 95.8% 48.6%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.61 46.0 3.98e-01 83.1% 62.6%
7fhyB01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.60 52.0 3.52e-01 100.0% 55.7%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.60 49.0 4.40e-01 93.0% 85.6%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.59 47.0 4.08e-01 87.3% 71.2%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.59 52.0 4.92e-01 97.2% 96.4%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.59 51.0 4.47e-01 95.8% 74.5%
4a64C03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 49.0 4.46e-01 95.8% 89.0%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 41.0 3.75e-01 80.3% 53.9%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 42.0 4.43e-01 83.1% 90.5%
1floA01 3.30.300.80 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 0.57 50.0 4.46e-01 100.0% 93.3%
3pvtA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 48.0 3.25e-01 100.0% 66.4%
4l3tA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 41.0 2.83e-01 80.3% 53.2%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.55 38.0 3.75e-01 100.0% 65.8%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 47.0 3.90e-01 98.6% 82.6%
1aluA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 43.0 3.43e-01 91.5% 76.4%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 44.0 3.18e-01 97.2% 77.1%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.51 40.0 3.29e-01 90.1% 62.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511170 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.67 51.0 5.10e-01 88.7% 78.7%
4953387 604.17.1.1 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.66 52.0 5.53e-01 87.3% 100.0%
3595289 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 52.0 4.76e-01 87.3% 68.4%
3703368 109.4.1.563 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3437 0.65 54.0 3.63e-01 91.5% 53.6%
3829962 109.4.1.1497 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, CLASP_N, XMAP215_CLASP_TOG 0.63 56.0 3.03e-01 100.0% 26.8%
2089782 601.56.1.1 alpha bundles › Four-helical up-and-down bundle › Contact-dependent inhibitor I (CdiI) › Contact-dependent inhibitor I (CdiI) › CdiI-like 0.62 53.0 4.63e-01 94.4% 62.6%
4975746 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.61 44.0 4.76e-01 80.3% 91.5%
4028568 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.61 52.0 4.02e-01 93.0% 44.5%
3837663 109.4.1.1380 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, IBB, HEAT_2, Arm_3 0.61 51.0 3.10e-01 95.8% 16.3%
2774879 4244.1.1.2 a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › Erythro_esteras 0.60 49.0 3.11e-01 94.4% 25.5%
4095580 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.60 49.0 4.50e-01 90.1% 83.2%
3929910 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.60 45.0 3.55e-01 83.1% 37.4%
3268033 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 46.0 3.75e-01 87.3% 67.6%
1148128 622.5.1.1 alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27 › Nas2_N 0.59 47.0 4.08e-01 87.3% 71.2%
3515847 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.59 43.0 4.01e-01 80.3% 63.2%
3239878 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.59 49.0 4.63e-01 97.2% 91.1%
4468502 192.11.1.1 alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR 0.59 39.0 4.16e-01 74.6% 80.0%
3938667 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.58 42.0 3.98e-01 78.9% 70.0%
3769364 196.1.1.1 alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.58 48.0 3.92e-01 98.6% 46.7%
4147954 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.57 49.0 4.59e-01 97.2% 86.7%
3387796 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.57 49.0 4.57e-01 97.2% 88.9%
4043670 192.4.1.26 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Nlig-Ia 0.57 44.0 4.33e-01 83.1% 78.7%
4567001 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.57 48.0 4.45e-01 97.2% 81.1%
3744166 109.4.1.291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF_NOP9 0.56 46.0 2.73e-01 93.0% 11.0%
4967526 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 45.0 2.98e-01 87.3% 50.3%
5054079 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.56 40.0 3.87e-01 74.6% 71.2%
4048456 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.56 45.0 4.25e-01 94.4% 86.7%
3240455 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 46.0 4.37e-01 97.2% 97.8%
4312756 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.56 40.0 3.99e-01 76.1% 72.0%
3833833 109.4.1.1274 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.56 43.0 2.76e-01 100.0% 15.2%
4015907 601.33.1.14 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Erg28 0.55 45.0 4.29e-01 93.0% 83.3%
3679438 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.54 39.0 3.69e-01 78.9% 65.6%
3997012 604.30.1.1 alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2 › PEN-2 0.53 43.0 4.00e-01 97.2% 70.5%
5055139 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.50 40.0 3.33e-01 90.1% 89.6%
D2 medium residues 72-162
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.78 52.0 3.82e-01 74.7% 28.1%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.76 50.0 3.75e-01 71.4% 30.7%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.74 49.0 3.75e-01 70.3% 31.8%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 48.0 3.59e-01 71.4% 28.8%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.72 49.0 3.58e-01 71.4% 27.9%
1rypC00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.71 48.0 3.46e-01 71.4% 26.2%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.71 48.0 3.57e-01 71.4% 29.9%
8etcb01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 46.0 3.96e-01 78.0% 80.1%
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.62 43.0 4.32e-01 70.3% 79.1%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 45.0 3.81e-01 79.1% 66.9%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 38.0 3.37e-01 82.4% 47.4%
5z5mA01 1.10.3330.10 Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase 0.53 38.0 3.22e-01 73.6% 64.4%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 36.0 2.92e-01 72.5% 50.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3639727 148.1.3.206 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31015 0.69 47.0 4.42e-01 70.3% 90.9%
5051147 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.66 52.0 3.81e-01 84.6% 37.5%
4014891 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 49.0 4.89e-01 79.1% 88.4%
3804317 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.66 48.0 4.52e-01 78.0% 85.8%
3695484 148.1.3.212 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 0.65 49.0 4.62e-01 79.1% 76.4%
4243827 507.1.1.0 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related 0.65 50.0 4.39e-01 82.4% 80.0%
3617570 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.62 45.0 3.69e-01 75.8% 63.1%
3206514 192.2.1.6 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_3 0.60 47.0 4.25e-01 92.3% 60.8%
3700069 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.59 41.0 3.80e-01 71.4% 73.0%
3991915 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.58 50.0 4.00e-01 92.3% 97.1%
4507743 2003.1.1.76 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.57 40.0 3.18e-01 73.6% 97.8%
3459967 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.56 34.0 3.14e-01 85.7% 46.6%
3413184 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.55 31.0 3.02e-01 80.2% 49.0%
3928401 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 32.0 3.64e-01 71.4% 90.0%
3579615 103.1.1.3 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.52 37.0 3.80e-01 75.8% 89.4%
5081366 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.50 44.0 3.63e-01 96.7% 58.8%
3715279 101.1.1.276 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-bind_6 0.50 36.0 2.89e-01 75.8% 48.3%