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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00166

Bact-Vir

H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00166

Identity

Kingdom:
phage

Quality

70.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 63-126
PDB
Domain cluster: rep: GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00067__D3-54
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 46.0 3.99e-01 85.9% 45.4%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 47.0 4.14e-01 85.9% 84.0%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 46.0 4.11e-01 85.9% 88.0%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.84e-01 89.1% 65.2%
3o4lD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.92e-01 89.1% 66.3%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 36.0 2.76e-01 85.9% 26.8%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 39.0 3.45e-01 85.9% 51.0%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.54 37.0 3.90e-01 84.4% 92.0%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 43.0 3.86e-01 89.1% 71.3%
1hxmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.52e-01 87.5% 62.0%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 41.0 2.78e-01 84.4% 91.1%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.41e-01 84.4% 95.7%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.26e-01 85.9% 47.5%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.52 40.0 3.01e-01 87.5% 78.9%
7ui8A01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.38e-01 84.4% 52.9%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 38.0 2.82e-01 81.2% 74.1%
2k2eA01 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.50 36.0 3.00e-01 81.2% 86.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.70 53.0 5.17e-01 81.2% 100.0%
5017099 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.64 38.0 3.23e-01 79.7% 36.2%
3594014 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.60 43.0 2.98e-01 84.4% 20.8%
3581513 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 45.0 4.24e-01 85.9% 88.7%
4018289 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 44.0 3.43e-01 84.4% 42.8%
3721040 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.57 40.0 2.73e-01 87.5% 19.6%
3723853 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 48.0 3.03e-01 100.0% 56.1%
3548295 221.1.1.53 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_3 0.55 45.0 4.00e-01 89.1% 69.7%
3519916 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 43.0 3.82e-01 87.5% 71.6%
3963369 4222.1.1.2 ↗ a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.54 42.0 3.71e-01 84.4% 61.1%
None — 0.53 39.0 2.50e-01 78.1% 87.1%
5003527 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.52 40.0 3.22e-01 90.6% 62.0%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.52 35.0 3.89e-01 85.9% 100.0%
4104751 10.12.1.15 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD 0.52 43.0 3.18e-01 98.4% 98.4%
4982642 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.51 43.0 2.59e-01 100.0% 61.8%
3508713 382.1.1.25 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.51 41.0 3.42e-01 92.2% 70.8%
4982257 3662.1.1.4 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac 0.50 37.0 3.15e-01 78.1% 64.8%
3579804 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 35.0 3.12e-01 85.9% 48.0%
None — 0.50 41.0 3.64e-01 96.9% 91.0%
5049631 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 39.0 3.02e-01 84.4% 67.1%
3741114 223.2.1.29 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.50 39.0 3.03e-01 87.5% 41.2%