←Back to structures
H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00177
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00177
Identity
- Kingdom:
- phage
Quality
79.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-67
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 52.0 | 3.11e-01 | 91.9% | 45.8% |
| 2qm0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 49.0 | 3.31e-01 | 91.9% | 46.4% |
| 3f02B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.60 | 48.0 | 4.15e-01 | 95.2% | 56.0% |
| 6eugA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.60 | 48.0 | 3.03e-01 | 90.3% | 42.4% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 49.0 | 3.70e-01 | 95.2% | 63.2% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 46.0 | 3.14e-01 | 90.3% | 37.8% |
| 3nqhA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 49.0 | 3.18e-01 | 96.8% | 41.6% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 46.0 | 3.01e-01 | 90.3% | 32.1% |
| 4g79A00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.58 | 49.0 | 3.90e-01 | 98.4% | 87.3% |
| 4dy0B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.57 | 47.0 | 3.81e-01 | 96.8% | 71.1% |
| 3dohA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 43.0 | 3.07e-01 | 91.9% | 47.1% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 43.0 | 3.70e-01 | 83.9% | 57.0% |
| 2yz0A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 45.0 | 3.66e-01 | 98.4% | 60.1% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.55 | 41.0 | 4.10e-01 | 91.9% | 81.2% |
| 3t1oA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 3.02e-01 | 83.9% | 33.3% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.55 | 44.0 | 3.67e-01 | 93.5% | 85.1% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.54 | 46.0 | 3.45e-01 | 100.0% | 41.8% |
| 2daxA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 46.0 | 3.64e-01 | 98.4% | 74.5% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 40.0 | 4.02e-01 | 91.9% | 80.0% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 37.0 | 2.96e-01 | 72.6% | 58.8% |
| 1q48A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.53 | 45.0 | 3.62e-01 | 100.0% | 69.4% |
| 6nyoA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 44.0 | 3.28e-01 | 100.0% | 81.9% |
| 3kojB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.62e-01 | 83.9% | 75.6% |
| 2kxgA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.55e-01 | 83.9% | 56.8% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 39.0 | 3.98e-01 | 91.9% | 91.2% |
| 6a6fA00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.53 | 45.0 | 3.59e-01 | 100.0% | 83.8% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 43.0 | 3.55e-01 | 98.4% | 68.0% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 34.0 | 3.32e-01 | 80.6% | 57.5% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 34.0 | 3.29e-01 | 77.4% | 56.8% |
| 4o9dA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 2.72e-01 | 96.8% | 29.9% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.52 | 38.0 | 3.70e-01 | 100.0% | 70.4% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 44.0 | 2.90e-01 | 96.8% | 57.7% |
| 1jc4A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 44.0 | 3.43e-01 | 98.4% | 66.2% |
| 3pesA00 | 3.30.300.260 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 41.0 | 3.84e-01 | 93.5% | 90.4% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 40.0 | 3.21e-01 | 93.5% | 47.0% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 3.24e-01 | 85.5% | 47.1% |
| 2dawA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 42.0 | 3.46e-01 | 100.0% | 75.2% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 42.0 | 3.88e-01 | 100.0% | 95.6% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 42.0 | 3.47e-01 | 100.0% | 67.2% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3808070 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.63 | 46.0 | 3.63e-01 | 79.0% | 69.2% |
| 3832491 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.60 | 52.0 | 3.32e-01 | 100.0% | 46.6% |
| 3789933 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.60 | 49.0 | 4.19e-01 | 93.5% | 81.9% |
| 3599571 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 45.0 | 3.72e-01 | 83.9% | 74.8% |
| 3415735 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.59 | 48.0 | 4.29e-01 | 96.8% | 77.9% |
| 139998 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.58 | 49.0 | 3.18e-01 | 96.8% | 41.4% |
| 3266323 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.58 | 49.0 | 4.08e-01 | 100.0% | 85.0% |
| 3871082 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 43.0 | 3.29e-01 | 80.6% | 77.3% |
| 3391461 | 3308.2.1.1 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD | 0.58 | 44.0 | 4.21e-01 | 85.5% | 84.0% |
| 3609610 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.57 | 46.0 | 3.02e-01 | 91.9% | 29.5% |
| 3522960 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 42.0 | 3.28e-01 | 80.6% | 77.2% |
| 3510355 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.56 | 48.0 | 3.94e-01 | 98.4% | 75.0% |
| 3211050 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.56 | 44.0 | 3.51e-01 | 90.3% | 71.9% |
| 4982145 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 45.0 | 3.78e-01 | 96.8% | 63.3% |
| 3482965 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 44.0 | 3.66e-01 | 96.8% | 64.6% |
| 3265334 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 46.0 | 3.94e-01 | 100.0% | 78.2% |
| 4028705 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 46.0 | 3.86e-01 | 100.0% | 68.3% |
| 3331262 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.55 | 46.0 | 4.13e-01 | 100.0% | 83.2% |
| 4029709 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 45.0 | 3.76e-01 | 100.0% | 68.0% |
| 4946325 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 37.0 | 3.20e-01 | 75.8% | 42.9% |
| 3404964 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.54 | 42.0 | 3.62e-01 | 93.5% | 83.5% |
| 3254677 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.54 | 45.0 | 3.86e-01 | 100.0% | 78.2% |
| 4023469 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 43.0 | 3.54e-01 | 100.0% | 66.4% |
| 423718 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.53 | 38.0 | 3.61e-01 | 80.6% | 69.1% |
| 3709267 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.53 | 44.0 | 2.87e-01 | 100.0% | 52.6% |
| 3699382 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.53 | 45.0 | 3.14e-01 | 100.0% | 78.2% |
| 3433324 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.53 | 44.0 | 2.82e-01 | 100.0% | 39.7% |
| 3820181 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.52 | 43.0 | 3.51e-01 | 100.0% | 70.4% |
| 4618123 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.52 | 41.0 | 3.15e-01 | 95.2% | 35.9% |
| 6540 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.51 | 42.0 | 3.41e-01 | 100.0% | 55.3% |
| 3801626 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 41.0 | 3.58e-01 | 96.8% | 93.6% |
| 3492622 | 3338.1.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain | 0.51 | 41.0 | 3.42e-01 | 95.2% | 96.7% |
| 4106796 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.51 | 35.0 | 3.55e-01 | 75.8% | 73.3% |
| 3253855 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.51 | 41.0 | 3.79e-01 | 96.8% | 96.5% |
| 3664013 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 42.0 | 2.80e-01 | 100.0% | 36.9% |