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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00182
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00182
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-80
Domain cluster:
rep: H1c1_full_scaffold_271_prodigal-single.1__X__X__00350__D12-79
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfI02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 41.0 | 3.94e-01 | 88.1% | 57.9% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.60 | 45.0 | 4.80e-01 | 98.5% | 96.4% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 39.0 | 3.44e-01 | 92.5% | 50.9% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 37.0 | 3.10e-01 | 74.6% | 63.5% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.52 | 32.0 | 3.67e-01 | 70.1% | 93.2% |
| 4e2xA01 | 6.20.50.110 | Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain | 0.51 | 37.0 | 4.06e-01 | 82.1% | 100.0% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.50 | 34.0 | 3.88e-01 | 94.0% | 97.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4982529 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 44.0 | 4.82e-01 | 92.5% | 94.0% |
| 5072764 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 44.0 | 4.82e-01 | 88.1% | 100.0% |
| 3816604 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.61 | 39.0 | 4.01e-01 | 86.6% | 66.2% |
| 5028865 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 41.0 | 4.59e-01 | 91.0% | 94.0% |
| 3781427 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.59 | 44.0 | 3.60e-01 | 94.0% | 43.2% |
| 3804890 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.58 | 37.0 | 3.84e-01 | 88.1% | 71.2% |
| 3598298 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 38.0 | 3.92e-01 | 88.1% | 73.3% |
| 3553625 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.58 | 41.0 | 4.47e-01 | 89.6% | 92.7% |
| 3274280 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.57 | 47.0 | 3.11e-01 | 89.6% | 88.4% |
| 3958145 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.32e-01 | 98.5% | 81.5% |
| 3204334 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.57 | 37.0 | 4.05e-01 | 97.0% | 88.0% |
| 4044015 | 3364.1.1.2 ↗ | few secondary structure elements › Epidermal patterning factor-like protein 9 › Epidermal patterning factor-like protein 9 › Epidermal patterning factor-like protein 9 › EPF | 0.57 | 35.0 | 3.90e-01 | 91.0% | 83.7% |
| 4968450 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 35.0 | 3.71e-01 | 70.1% | 72.7% |
| 4137758 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.56 | 39.0 | 4.28e-01 | 82.1% | 100.0% |
| 3189324 | 375.1.1.319 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 | 0.56 | 46.0 | 4.53e-01 | 91.0% | 88.6% |
| 4966283 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 36.0 | 3.69e-01 | 94.0% | 69.2% |
| 3954203 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 42.0 | 4.05e-01 | 89.6% | 73.3% |
| 3205743 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.55 | 42.0 | 3.57e-01 | 94.0% | 48.3% |
| 4971344 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 37.0 | 4.22e-01 | 86.6% | 96.0% |
| 2795835 | 64.1.1.3 ↗ | beta meanders › WW domain-like › WW domain › WW domain › MBD | 0.54 | 33.0 | 3.68e-01 | 89.6% | 80.0% |
| 4998373 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 37.0 | 4.07e-01 | 89.6% | 98.0% |
| 3731566 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 44.0 | 3.36e-01 | 97.0% | 51.9% |
| 3589295 | 3414.1.1.1 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Big_3 | 0.54 | 38.0 | 3.73e-01 | 95.5% | 68.0% |
| 4943539 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 34.0 | 3.77e-01 | 94.0% | 100.0% |
| 3801858 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.53 | 32.0 | 3.37e-01 | 89.6% | 66.7% |
| 3194814 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.53 | 38.0 | 2.92e-01 | 76.1% | 70.3% |
| 5081200 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 34.0 | 3.57e-01 | 94.0% | 76.7% |
| 5019855 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 39.0 | 3.93e-01 | 95.5% | 82.9% |
| 3445009 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.51 | 32.0 | 2.43e-01 | 88.1% | 22.3% |
| 4935681 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 29.0 | 3.17e-01 | 92.5% | 67.3% |
| 3669262 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.50 | 41.0 | 2.59e-01 | 92.5% | 36.5% |
| 3869065 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.50 | 39.0 | 3.54e-01 | 88.1% | 62.0% |
| 3591102 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.50 | 34.0 | 2.74e-01 | 71.6% | 66.7% |