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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00231
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00231
Identity
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-73
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.67 | 51.0 | 3.77e-01 | 82.9% | 55.2% |
| 2ykyB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.66 | 51.0 | 3.73e-01 | 82.9% | 52.9% |
| 3u5nA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 44.0 | 3.71e-01 | 82.9% | 65.0% |
| 5vt9B01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 40.0 | 4.03e-01 | 82.9% | 72.6% |
| 3dmqA07 | 3.30.360.80 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.57 | 41.0 | 4.04e-01 | 77.1% | 100.0% |
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 50.0 | 3.63e-01 | 100.0% | 49.2% |
| 2ffjA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.57 | 40.0 | 4.16e-01 | 82.9% | 81.5% |
| 1lfwA03 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 42.0 | 3.89e-01 | 94.3% | 63.6% |
| 4ggnB01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 39.0 | 4.14e-01 | 82.9% | 88.5% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 4.26e-01 | 98.6% | 84.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 46.0 | 4.38e-01 | 100.0% | 90.9% |
| 1utaA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.53 | 40.0 | 3.95e-01 | 95.7% | 75.3% |
| 2pkhA01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.52 | 37.0 | 3.12e-01 | 77.1% | 90.0% |
| 4gs5A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.50 | 43.0 | 3.80e-01 | 97.1% | 64.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4103373 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.68 | 45.0 | 5.00e-01 | 75.7% | 87.3% |
| 5049094 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.68 | 50.0 | 4.31e-01 | 78.6% | 93.6% |
| 3936596 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 48.0 | 4.46e-01 | 84.3% | 61.1% |
| 4942580 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 45.0 | 4.20e-01 | 72.9% | 94.1% |
| 5012108 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 46.0 | 3.03e-01 | 77.1% | 27.2% |
| 3466891 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.62 | 51.0 | 4.08e-01 | 90.0% | 49.6% |
| 5058004 | 304.17.1.2 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN | 0.60 | 46.0 | 4.43e-01 | 98.6% | 71.2% |
| 5056042 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.60 | 47.0 | 4.61e-01 | 97.1% | 78.7% |
| 4885808 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.58 | 41.0 | 4.18e-01 | 90.0% | 74.3% |
| 4991115 | 2488.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot | 0.58 | 43.0 | 3.34e-01 | 80.0% | 81.6% |
| 4024124 | 148.1.3.40 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid | 0.58 | 45.0 | 3.59e-01 | 87.1% | 61.3% |
| 4134302 | 2488.1.1.8 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 | 0.58 | 41.0 | 3.40e-01 | 75.7% | 100.0% |
| 3697747 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.56 | 43.0 | 3.17e-01 | 84.3% | 46.8% |
| 4995145 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 44.0 | 4.18e-01 | 90.0% | 70.6% |
| 3168452 | 331.10.2.3 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 | 0.56 | 40.0 | 3.61e-01 | 78.6% | 97.1% |
| 4228937 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.55 | 42.0 | 3.80e-01 | 94.3% | 60.0% |
| 4122018 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.55 | 40.0 | 3.64e-01 | 80.0% | 94.0% |
| 4236584 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.54 | 37.0 | 4.19e-01 | 81.4% | 98.0% |
| 3690327 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.53 | 37.0 | 3.32e-01 | 90.0% | 48.2% |
| 3324892 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.53 | 37.0 | 3.40e-01 | 90.0% | 53.1% |
| 4090404 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 41.0 | 3.68e-01 | 90.0% | 100.0% |
| 4314239 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.53 | 36.0 | 4.02e-01 | 87.1% | 100.0% |
| 4009877 | 310.3.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM | 0.52 | 46.0 | 4.00e-01 | 95.7% | 70.5% |
| 5010276 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.50 | 36.0 | 3.00e-01 | 75.7% | 82.3% |
| 3998970 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.50 | 40.0 | 3.17e-01 | 94.3% | 40.6% |