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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00232
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00232
Identity
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-62
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7200 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.65 | 50.0 | 4.25e-01 | 100.0% | 49.0% |
| 1r0vA02 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.60 | 52.0 | 4.78e-01 | 100.0% | 82.7% |
| 2el8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 43.0 | 3.79e-01 | 80.4% | 81.3% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.60 | 42.0 | 2.97e-01 | 100.0% | 22.9% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 3.73e-01 | 100.0% | 85.7% |
| 1g01A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 49.0 | 3.02e-01 | 98.2% | 68.6% |
| 4w8kA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.56 | 42.0 | 3.68e-01 | 94.6% | 52.7% |
| 6jyxA01 | 2.10.270.20 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › | 0.54 | 46.0 | 3.62e-01 | 98.2% | 66.9% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.54 | 39.0 | 3.58e-01 | 92.9% | 56.0% |
| 3qwuA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.54 | 42.0 | 3.03e-01 | 89.3% | 96.1% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 44.0 | 3.35e-01 | 98.2% | 79.3% |
| 3id6A01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 41.0 | 3.40e-01 | 85.7% | 70.8% |
| 6rarI01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 41.0 | 2.92e-01 | 87.5% | 59.5% |
| 1u7pD00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 42.0 | 3.17e-01 | 94.6% | 82.6% |
| 3hiaA00 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.52 | 36.0 | 3.51e-01 | 98.2% | 63.6% |
| 2vugA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.52 | 40.0 | 3.44e-01 | 89.3% | 97.1% |
| 6aqgD02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 40.0 | 2.51e-01 | 89.3% | 24.9% |
| 3dmgA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 37.0 | 2.73e-01 | 82.1% | 76.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4303875 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.65 | 45.0 | 3.87e-01 | 71.4% | 53.3% |
| 4870527 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.64 | 49.0 | 4.20e-01 | 100.0% | 49.0% |
| 5012906 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.63 | 44.0 | 2.97e-01 | 75.0% | 63.2% |
| 3267835 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.60 | 44.0 | 3.72e-01 | 83.9% | 54.3% |
| 3226288 | 2484.1.1.190 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 | 0.59 | 45.0 | 3.04e-01 | 89.3% | 39.2% |
| 4162179 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.58 | 44.0 | 3.34e-01 | 87.5% | 55.5% |
| 3973557 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 44.0 | 3.65e-01 | 89.3% | 71.8% |
| 5053311 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.56 | 40.0 | 2.63e-01 | 75.0% | 29.8% |
| 5056777 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.06e-01 | 91.1% | 76.2% |
| 4048836 | 2003.1.10.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Rimk_N | 0.56 | 47.0 | 3.89e-01 | 100.0% | 67.3% |
| 3423625 | 109.4.1.1371 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif | 0.56 | 42.0 | 2.49e-01 | 85.7% | 13.0% |
| 4050578 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.55 | 44.0 | 3.58e-01 | 94.6% | 72.0% |
| 3714674 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.55 | 39.0 | 3.98e-01 | 76.8% | 100.0% |
| 3727266 | 3468.1.1.0 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain | 0.54 | 40.0 | 3.09e-01 | 80.4% | 94.6% |
| 3953212 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.54 | 44.0 | 3.46e-01 | 96.4% | 52.6% |
| 4927251 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.54 | 46.0 | 3.84e-01 | 98.2% | 87.0% |
| 2543709 | 2003.1.2.60 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO, NAD_binding_8 | 0.53 | 37.0 | 2.53e-01 | 94.6% | 18.7% |
| 3375945 | 109.4.1.619 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase | 0.53 | 39.0 | 3.13e-01 | 80.4% | 91.3% |
| 5022797 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.52 | 41.0 | 2.79e-01 | 87.5% | 39.5% |
| 3924083 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.52 | 37.0 | 2.65e-01 | 91.1% | 24.7% |
| 4935165 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.52 | 36.0 | 2.51e-01 | 75.0% | 45.7% |
| 1200774 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.52 | 35.0 | 2.53e-01 | 73.2% | 37.8% |
| 4995719 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.52 | 40.0 | 2.95e-01 | 91.1% | 95.4% |
| 3420078 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.51 | 39.0 | 2.25e-01 | 85.7% | 10.7% |
| 3676802 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 2.44e-01 | 92.9% | 61.0% |
| 3321410 | 109.4.1.2586 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, Eplus_motif, E_motif | 0.51 | 39.0 | 2.26e-01 | 85.7% | 12.1% |
| 3973165 | 818.1.1.0 ↗ | a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain | 0.51 | 38.0 | 3.48e-01 | 83.9% | 83.7% |
| 4929492 | 601.1.3.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 | 0.50 | 34.0 | 2.65e-01 | 73.2% | 90.0% |