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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00259
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00259
Identity
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-60
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.75 | 47.0 | 5.42e-01 | 89.8% | 95.0% |
| 3c12A01 | 2.30.30.910 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 55.0 | 5.84e-01 | 94.9% | 92.2% |
| 3kbgA03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 49.0 | 5.02e-01 | 91.5% | 85.7% |
| 1yvuA02 | 2.30.340.10 | Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily | 0.63 | 54.0 | 4.67e-01 | 96.6% | 100.0% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 4.85e-01 | 91.5% | 97.9% |
| 1m9sA03 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 49.0 | 4.52e-01 | 88.1% | 92.0% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 44.0 | 4.66e-01 | 94.9% | 94.0% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.60 | 52.0 | 3.92e-01 | 98.3% | 57.9% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 50.0 | 4.95e-01 | 96.6% | 98.4% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.94e-01 | 100.0% | 94.2% |
| 8b2gA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 43.0 | 4.35e-01 | 76.3% | 100.0% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 50.0 | 4.99e-01 | 98.3% | 98.4% |
| 3cp7A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 44.0 | 3.69e-01 | 83.1% | 78.4% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 50.0 | 4.91e-01 | 100.0% | 92.3% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 51.0 | 4.75e-01 | 100.0% | 92.0% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 46.0 | 4.67e-01 | 91.5% | 98.3% |
| 6ku8A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 44.0 | 4.18e-01 | 83.1% | 91.3% |
| 2kssA01 | 2.30.30.630 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 4.44e-01 | 89.8% | 96.8% |
| 3qzqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 42.0 | 4.04e-01 | 81.4% | 91.3% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 45.0 | 4.16e-01 | 91.5% | 78.2% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 45.0 | 4.29e-01 | 94.9% | 84.3% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 41.0 | 4.00e-01 | 89.8% | 82.9% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 38.0 | 3.70e-01 | 83.1% | 68.2% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 42.0 | 3.56e-01 | 91.5% | 82.2% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 39.0 | 3.81e-01 | 83.1% | 71.2% |
| 2xfmA00 | 2.170.260.10 | Mainly Beta › Beta Complex › paz domain › paz domain | 0.52 | 43.0 | 3.58e-01 | 100.0% | 95.0% |
| 1bpvA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.41e-01 | 86.4% | 80.8% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 37.0 | 3.62e-01 | 83.1% | 67.2% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 40.0 | 3.89e-01 | 89.8% | 92.5% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.46e-01 | 89.8% | 74.5% |
| 1s3iA02 | 3.10.25.10 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain | 0.51 | 37.0 | 3.25e-01 | 83.1% | 94.1% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017637 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.70 | 55.0 | 5.67e-01 | 98.3% | 90.9% |
| 4076879 | 4.1.1.87 ↗ | beta barrels › SH3 › SH3 › SH3 › FLgD_tudor | 0.70 | 52.0 | 5.55e-01 | 94.9% | 98.0% |
| 4110878 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 48.0 | 5.33e-01 | 84.7% | 100.0% |
| 4480519 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 51.0 | 5.09e-01 | 89.8% | 81.7% |
| 3700872 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 51.0 | 4.52e-01 | 89.8% | 87.1% |
| 5043979 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 52.0 | 4.98e-01 | 94.9% | 92.9% |
| 3374893 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.62 | 52.0 | 3.98e-01 | 96.6% | 58.6% |
| 1005416 | 4.1.1.121 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ_4 | 0.62 | 52.0 | 4.54e-01 | 96.6% | 97.8% |
| 3170251 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.61 | 53.0 | 4.06e-01 | 98.3% | 73.6% |
| 4043121 | 4.1.1.36 ↗ | beta barrels › SH3 › SH3 › SH3 › FeThRed_A | 0.60 | 50.0 | 4.69e-01 | 93.2% | 100.0% |
| 3737978 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.59 | 52.0 | 4.15e-01 | 100.0% | 100.0% |
| 4220608 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.59 | 49.0 | 4.61e-01 | 94.9% | 78.7% |
| 3754343 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.59 | 49.0 | 4.65e-01 | 98.3% | 82.7% |
| 3853598 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.58 | 49.0 | 4.47e-01 | 96.6% | 73.8% |
| 3902990 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.57 | 48.0 | 4.28e-01 | 98.3% | 68.9% |
| 4283649 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.57 | 48.0 | 3.89e-01 | 98.3% | 96.6% |
| 3598206 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 49.0 | 3.97e-01 | 98.3% | 80.0% |
| 3846130 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.56 | 46.0 | 3.26e-01 | 98.3% | 30.2% |
| 4395103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 47.0 | 4.20e-01 | 100.0% | 88.9% |
| 3576726 | 5.1.2.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase | 0.55 | 46.0 | 2.73e-01 | 93.2% | 24.0% |
| 4257535 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.55 | 41.0 | 3.27e-01 | 79.7% | 67.8% |
| 4654684 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.54 | 44.0 | 3.73e-01 | 96.6% | 98.2% |
| 4500568 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.54 | 43.0 | 3.72e-01 | 94.9% | 97.1% |
| 4276265 | 6012.1.1.0 ↗ | few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI | 0.53 | 32.0 | 3.59e-01 | 71.2% | 85.0% |
| 4077893 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 43.0 | 2.56e-01 | 98.3% | 10.9% |
| 5012022 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.52 | 36.0 | 3.43e-01 | 96.6% | 58.1% |
| 3875127 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.52 | 38.0 | 3.26e-01 | 83.1% | 86.4% |
| 3769766 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.52 | 42.0 | 3.47e-01 | 94.9% | 96.7% |
| 3257948 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.52 | 36.0 | 3.50e-01 | 72.9% | 75.0% |
| 4011050 | 2003.1.2.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 | 0.51 | 46.0 | 3.17e-01 | 100.0% | 54.9% |
| 3193184 | 219.1.1.79 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 | 0.51 | 39.0 | 2.49e-01 | 89.8% | 20.3% |
| 5042764 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.50 | 40.0 | 3.32e-01 | 96.6% | 68.8% |