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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00302
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00302
Identity
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-65
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3votB02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.70 | 39.0 | 2.48e-01 | 90.2% | 10.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.65 | 59.0 | 4.20e-01 | 100.0% | 38.3% |
| 3c6mC01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.63 | 43.0 | 4.70e-01 | 90.2% | 97.7% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.63 | 48.0 | 3.60e-01 | 85.2% | 95.8% |
| 1wkbA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.62 | 38.0 | 2.58e-01 | 91.8% | 15.9% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.61 | 54.0 | 4.72e-01 | 100.0% | 69.6% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.61 | 48.0 | 3.55e-01 | 100.0% | 34.4% |
| 3myxA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 38.0 | 3.20e-01 | 100.0% | 34.8% |
| 1m1hA02 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.58 | 45.0 | 4.22e-01 | 90.2% | 96.3% |
| 5wfiA01 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 50.0 | 4.05e-01 | 100.0% | 49.6% |
| 6hxiA01 | 3.30.470.110 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.58 | 43.0 | 3.00e-01 | 90.2% | 24.6% |
| 4p4tA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 42.0 | 2.74e-01 | 82.0% | 36.4% |
| 2nqlA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 35.0 | 2.61e-01 | 90.2% | 20.8% |
| 1wjvA01 | 3.30.1490.490 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.56 | 37.0 | 4.01e-01 | 98.4% | 84.3% |
| 6baoA03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.56 | 40.0 | 3.15e-01 | 80.3% | 95.4% |
| 1vajA02 | 3.30.1490.150 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 | 0.55 | 45.0 | 4.22e-01 | 90.2% | 74.3% |
| 4jndA02 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.53 | 43.0 | 2.97e-01 | 100.0% | 98.9% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.53 | 47.0 | 3.88e-01 | 100.0% | 78.0% |
| 2yvlA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.53 | 40.0 | 4.06e-01 | 88.5% | 87.9% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 36.0 | 3.30e-01 | 77.0% | 84.2% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.52 | 46.0 | 4.28e-01 | 100.0% | 84.2% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 38.0 | 3.92e-01 | 82.0% | 100.0% |
| 4qd4A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 43.0 | 2.71e-01 | 96.7% | 44.5% |
| 2i0oA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 38.0 | 2.64e-01 | 90.2% | 91.3% |
| 2z86D02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 39.0 | 2.62e-01 | 91.8% | 20.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.50 | 40.0 | 3.13e-01 | 90.2% | 81.1% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.50 | 44.0 | 3.19e-01 | 100.0% | 63.1% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.50 | 44.0 | 3.31e-01 | 100.0% | 59.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587556 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.71 | 58.0 | 5.63e-01 | 93.4% | 85.7% |
| 3690519 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.70 | 41.0 | 2.45e-01 | 75.4% | 8.1% |
| 4955746 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.67 | 41.0 | 3.66e-01 | 80.3% | 44.7% |
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.65 | 56.0 | 5.37e-01 | 100.0% | 82.6% |
| 4935672 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.64 | 50.0 | 3.84e-01 | 100.0% | 37.1% |
| 4954188 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.62 | 48.0 | 3.66e-01 | 100.0% | 34.9% |
| 1566366 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.62 | 46.0 | 3.31e-01 | 82.0% | 96.3% |
| 3927031 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 51.0 | 4.28e-01 | 91.8% | 56.2% |
| 3931629 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.61 | 49.0 | 4.29e-01 | 90.2% | 86.3% |
| 3989188 | 317.1.1.6 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › RamC_N | 0.60 | 53.0 | 3.76e-01 | 100.0% | 77.4% |
| 3896820 | 304.48.1.83 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › SGT1 | 0.60 | 53.0 | 3.74e-01 | 100.0% | 95.3% |
| None | — | 0.58 | 49.0 | 2.82e-01 | 96.7% | 9.7% | |
| 4949745 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.57 | 44.0 | 2.91e-01 | 100.0% | 20.0% |
| 2530280 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.56 | 42.0 | 4.26e-01 | 83.6% | 100.0% |
| 4655745 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.56 | 46.0 | 3.92e-01 | 90.2% | 95.0% |
| 5067915 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.56 | 49.0 | 3.19e-01 | 96.7% | 35.6% |
| 5018788 | 3784.1.1.0 ↗ | a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related | 0.55 | 46.0 | 3.97e-01 | 95.1% | 58.9% |
| 5017559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 44.0 | 4.36e-01 | 88.5% | 98.5% |
| 3696767 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.55 | 49.0 | 2.96e-01 | 100.0% | 17.5% |
| 3645247 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.54 | 43.0 | 3.94e-01 | 91.8% | 78.8% |
| 4944787 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.54 | 43.0 | 3.96e-01 | 88.5% | 96.2% |
| 4307366 | 3019.1.1.0 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain | 0.54 | 43.0 | 3.70e-01 | 95.1% | 71.8% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.53 | 45.0 | 3.19e-01 | 96.7% | 35.0% |
| 5050281 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.53 | 43.0 | 3.98e-01 | 90.2% | 98.8% |
| 4978273 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.53 | 45.0 | 2.97e-01 | 96.7% | 78.9% |
| 3711220 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.53 | 40.0 | 3.98e-01 | 85.2% | 95.4% |
| 3337215 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.52 | 42.0 | 3.82e-01 | 91.8% | 78.8% |
| 3320346 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.52 | 38.0 | 2.46e-01 | 82.0% | 44.0% |
| 4940035 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 46.0 | 3.80e-01 | 100.0% | 70.9% |
| 3914736 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.52 | 40.0 | 4.02e-01 | 88.5% | 98.5% |
| 4965123 | 223.2.1.63 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 | 0.52 | 46.0 | 3.68e-01 | 100.0% | 77.5% |
| 3921414 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 41.0 | 3.80e-01 | 90.2% | 83.5% |
| 3874516 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.51 | 40.0 | 2.54e-01 | 90.2% | 50.4% |
| 3606454 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.51 | 40.0 | 3.95e-01 | 90.2% | 98.5% |
| 3470449 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.51 | 40.0 | 3.76e-01 | 90.2% | 83.7% |
| 5028247 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.50 | 41.0 | 2.88e-01 | 95.1% | 74.1% |