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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00389
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00389
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-192
Domain cluster:
rep: ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00275__D6-174
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.69 | 28.0 | 3.47e-01 | 100.0% | 58.0% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 23.0 | 2.99e-01 | 95.7% | 61.6% |
| 7miqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 22.0 | 2.79e-01 | 98.4% | 60.0% |
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.50 | 28.0 | 3.03e-01 | 95.7% | 61.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3667321 | 621.1.1.12 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › SYS1 | 0.54 | 30.0 | 3.49e-01 | 93.5% | 74.6% |
| 3645762 | 1075.1.2.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › SYS1 (DEPRECATED) | 0.53 | 30.0 | 3.45e-01 | 91.9% | 74.6% |
| 3716460 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.53 | 29.0 | 2.93e-01 | 87.6% | 49.7% |
| 3404615 | 382.1.1.14 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 | 0.52 | 22.0 | 3.11e-01 | 97.8% | 82.4% |
| 3168854 | 4970.1.1.13 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › zf-C4pol | 0.52 | 27.0 | 3.51e-01 | 92.4% | 86.2% |
D2
high
residues 209-288
Domain cluster:
rep: OQ129425.1__WFG33738.1__YN120080_21__00021__D1-72
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.75 | 58.0 | 4.63e-01 | 85.0% | 87.3% |
| 4h63Q04 | 3.90.1150.120 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.74 | 59.0 | 5.25e-01 | 87.5% | 83.6% |
| 1m5q102 | 3.30.310.60 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain | 0.71 | 45.0 | 5.19e-01 | 82.5% | 89.7% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.66 | 46.0 | 4.20e-01 | 72.5% | 74.0% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.65 | 49.0 | 5.01e-01 | 81.2% | 91.1% |
| 3my2A00 | 2.60.450.10 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain | 0.65 | 45.0 | 3.85e-01 | 71.2% | 90.5% |
| 1w5rA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.61 | 42.0 | 3.29e-01 | 71.2% | 83.2% |
| 7qu9A01 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.61 | 47.0 | 2.89e-01 | 81.2% | 50.2% |
| 4bf3A00 | 2.30.31.50 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F | 0.61 | 45.0 | 3.85e-01 | 78.8% | 85.7% |
| 3nuhB02 | 3.30.300.370 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.57 | 43.0 | 3.71e-01 | 78.8% | 75.2% |
| 1orvA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.57 | 49.0 | 3.11e-01 | 100.0% | 50.4% |
| 2ghsA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 48.0 | 3.35e-01 | 97.5% | 72.9% |
| 2byoA00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.57 | 39.0 | 2.98e-01 | 70.0% | 37.2% |
| 5yjlC02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.55 | 45.0 | 4.02e-01 | 87.5% | 75.7% |
| 3a7sA00 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.55 | 44.0 | 3.27e-01 | 87.5% | 81.4% |
| 1iv8A02 | 3.30.1590.10 | Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 | 0.54 | 37.0 | 3.30e-01 | 83.7% | 48.3% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.53 | 37.0 | 2.76e-01 | 71.2% | 35.2% |
| 4b8eB00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.52 | 40.0 | 3.06e-01 | 82.5% | 80.7% |
| 1k0eB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.52 | 40.0 | 2.59e-01 | 85.0% | 44.9% |
| 2f09A00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.52 | 39.0 | 3.91e-01 | 82.5% | 85.4% |
| 3h5aD01 | 3.90.930.70 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.51 | 36.0 | 3.51e-01 | 83.7% | 67.0% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.50 | 35.0 | 3.63e-01 | 81.2% | 80.6% |
| 2arzA02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.50 | 39.0 | 3.84e-01 | 87.5% | 83.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4057793 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.78 | 55.0 | 4.24e-01 | 72.5% | 42.4% |
| 4301684 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.76 | 53.0 | 4.02e-01 | 72.5% | 37.7% |
| 6656 | 241.12.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF3201 | 0.75 | 58.0 | 4.62e-01 | 85.0% | 86.7% |
| 3737151 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.74 | 60.0 | 3.75e-01 | 88.7% | 23.4% |
| 1005590 | 3561.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 | 0.74 | 59.0 | 3.74e-01 | 87.5% | 23.7% |
| 3242230 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 50.0 | 3.57e-01 | 71.2% | 32.6% |
| 3566388 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.71 | 37.0 | 4.88e-01 | 75.0% | 95.3% |
| 3243588 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.70 | 50.0 | 3.27e-01 | 73.8% | 25.2% |
| 4380974 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.69 | 52.0 | 4.08e-01 | 78.8% | 79.4% |
| 3218627 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.67 | 47.0 | 3.41e-01 | 72.5% | 27.9% |
| 3229102 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.66 | 45.0 | 3.12e-01 | 70.0% | 23.2% |
| 2084721 | 241.14.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C | 0.65 | 50.0 | 5.07e-01 | 82.5% | 90.9% |
| 3212404 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.65 | 46.0 | 3.19e-01 | 72.5% | 24.3% |
| 3218185 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 48.0 | 3.56e-01 | 80.0% | 48.8% |
| 3225229 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.64 | 43.0 | 3.03e-01 | 70.0% | 22.4% |
| 2581407 | 241.14.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C | 0.63 | 49.0 | 5.02e-01 | 85.0% | 93.6% |
| 3247669 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.63 | 45.0 | 3.14e-01 | 73.8% | 23.9% |
| 3235404 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.63 | 44.0 | 3.01e-01 | 71.2% | 22.4% |
| 3723017 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 48.0 | 5.22e-01 | 80.0% | 100.0% |
| 4965206 | 4221.1.1.3 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008 | 0.63 | 47.0 | 4.95e-01 | 78.8% | 92.9% |
| 3278865 | 142.3.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain | 0.62 | 44.0 | 4.85e-01 | 82.5% | 92.3% |
| 5003371 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.61 | 42.0 | 4.16e-01 | 75.0% | 67.1% |
| 3823449 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.60 | 45.0 | 3.04e-01 | 78.8% | 50.0% |
| 3436173 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 46.0 | 3.06e-01 | 82.5% | 23.3% |
| 4161009 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.59 | 41.0 | 4.36e-01 | 81.2% | 82.9% |
| 3549481 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.59 | 43.0 | 4.32e-01 | 82.5% | 77.5% |
| 3747736 | 331.23.1.7 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C | 0.58 | 43.0 | 4.32e-01 | 82.5% | 77.5% |
| 3936129 | 3006.1.1.0 ↗ | a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain | 0.58 | 43.0 | 4.54e-01 | 91.3% | 89.9% |
| 3386489 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.58 | 40.0 | 3.15e-01 | 71.2% | 35.3% |
| 81576 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.58 | 41.0 | 2.79e-01 | 72.5% | 32.0% |
| 4968280 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.57 | 44.0 | 4.24e-01 | 81.2% | 73.3% |
| 3209881 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.57 | 34.0 | 2.03e-01 | 71.2% | 8.2% |
| 3899939 | 331.1.1.13 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C | 0.56 | 41.0 | 4.15e-01 | 82.5% | 77.5% |
| 81577 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.55 | 43.0 | 2.74e-01 | 85.0% | 35.2% |
| 3398586 | 214.1.1.7 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_1 | 0.55 | 47.0 | 4.05e-01 | 95.0% | 76.8% |
| 3416069 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 37.0 | 3.95e-01 | 90.0% | 82.9% |
| 3289942 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 3.58e-01 | 83.7% | 64.7% |
| 3439608 | 5.1.4.219 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N | 0.54 | 46.0 | 3.01e-01 | 100.0% | 58.3% |
| 4024708 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.52 | 39.0 | 2.52e-01 | 78.8% | 39.7% |
| 3239076 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.51 | 33.0 | 3.76e-01 | 83.7% | 96.4% |
| 4379983 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.50 | 34.0 | 3.45e-01 | 70.0% | 93.8% |
| 3928614 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 42.0 | 3.34e-01 | 92.5% | 68.5% |