←Back to structures
H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00480
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00480
Identity
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-90
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.64 | 47.0 | 5.12e-01 | 100.0% | 97.2% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.63 | 48.0 | 5.13e-01 | 100.0% | 98.6% |
| 6ksrA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 45.0 | 3.72e-01 | 79.8% | 85.6% |
| 2ra8A01 | 2.20.140.10 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain | 0.59 | 37.0 | 3.96e-01 | 82.0% | 73.0% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.58 | 45.0 | 4.22e-01 | 86.5% | 78.0% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.56 | 41.0 | 3.60e-01 | 77.5% | 78.7% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 38.0 | 2.54e-01 | 71.9% | 31.3% |
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 41.0 | 3.11e-01 | 98.9% | 30.9% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.54 | 30.0 | 3.17e-01 | 78.7% | 57.5% |
| 1qmoE01 | 2.60.40.4220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 36.0 | 3.70e-01 | 79.8% | 71.4% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.54 | 47.0 | 4.02e-01 | 97.8% | 94.4% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 43.0 | 3.97e-01 | 91.0% | 88.2% |
| 1dglA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.31e-01 | 94.4% | 89.0% |
| 5t5lA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 40.0 | 3.03e-01 | 98.9% | 32.3% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 40.0 | 3.89e-01 | 85.4% | 83.7% |
| 6eotD01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.51 | 34.0 | 2.12e-01 | 70.8% | 11.3% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 31.0 | 3.42e-01 | 87.6% | 77.6% |
| 3bexA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 37.0 | 3.27e-01 | 76.4% | 60.3% |
| 3go2A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 38.0 | 3.55e-01 | 80.9% | 64.0% |
| 1jz7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.27e-01 | 73.0% | 96.5% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 35.0 | 3.81e-01 | 97.8% | 91.5% |
| 3i6eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 38.0 | 3.70e-01 | 83.1% | 77.7% |
| 4be3A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 42.0 | 2.97e-01 | 95.5% | 40.1% |
| 2ojhA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 38.0 | 2.75e-01 | 82.0% | 33.2% |
| 2gcuA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 36.0 | 2.77e-01 | 77.5% | 81.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2641778 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.61 | 37.0 | 3.81e-01 | 94.4% | 63.4% |
| 3971108 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 34.0 | 3.44e-01 | 79.8% | 53.3% |
| 3224967 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.59 | 35.0 | 2.56e-01 | 82.0% | 20.0% |
| 3741704 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.59 | 45.0 | 4.01e-01 | 83.1% | 71.5% |
| 3930399 | 4075.1.1.0 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain | 0.58 | 43.0 | 4.22e-01 | 78.7% | 81.8% |
| 4596967 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 41.0 | 3.11e-01 | 98.9% | 30.5% |
| 3744503 | 2484.8.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 | 0.55 | 41.0 | 2.96e-01 | 80.9% | 85.6% |
| 2859147 | 7091.1.1.1 ↗ | a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 | 0.55 | 43.0 | 3.65e-01 | 84.3% | 66.7% |
| 4931302 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.55 | 31.0 | 3.83e-01 | 79.8% | 96.0% |
| 5060852 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.54 | 28.0 | 3.64e-01 | 82.0% | 97.8% |
| 5064976 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 40.0 | 3.38e-01 | 80.9% | 81.2% |
| 3962048 | 227.1.1.15 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035 | 0.53 | 44.0 | 4.30e-01 | 94.4% | 82.0% |
| 5008670 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 41.0 | 2.98e-01 | 83.1% | 55.6% |
| 3577992 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 45.0 | 3.95e-01 | 98.9% | 75.0% |
| 3969907 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.52 | 39.0 | 2.84e-01 | 82.0% | 31.9% |
| 3989850 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.63e-01 | 89.9% | 68.0% |
| 4028555 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 36.0 | 3.84e-01 | 73.0% | 100.0% |
| 4443040 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.51 | 35.0 | 3.41e-01 | 98.9% | 61.5% |
| 3415471 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.51 | 39.0 | 3.75e-01 | 86.5% | 81.8% |
| 3619075 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.51 | 41.0 | 3.88e-01 | 89.9% | 79.1% |
| 5007420 | 2484.1.1.333 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 | 0.51 | 38.0 | 3.13e-01 | 79.8% | 61.8% |
| 3509080 | 2484.8.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) | 0.50 | 37.0 | 2.88e-01 | 80.9% | 88.9% |
| 3969569 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.50 | 31.0 | 3.54e-01 | 96.6% | 91.7% |
| 4380962 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.50 | 33.0 | 3.23e-01 | 98.9% | 58.1% |
| 3566631 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.50 | 27.0 | 2.88e-01 | 93.3% | 57.5% |
| 3928430 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.50 | 30.0 | 3.34e-01 | 76.4% | 75.7% |