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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00570
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00570
Identity
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-44
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.65 | 43.0 | 3.77e-01 | 100.0% | 46.8% |
| 5i0fB04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 47.0 | 3.69e-01 | 100.0% | 39.3% |
| 4lniJ01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.62 | 51.0 | 3.96e-01 | 100.0% | 50.0% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.60 | 51.0 | 4.97e-01 | 100.0% | 95.7% |
| 6hoyA02 | 2.20.28.200 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 49.0 | 4.72e-01 | 100.0% | 83.7% |
| 3w7tA04 | 3.30.1390.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30p/L7e | 0.59 | 39.0 | 4.24e-01 | 97.6% | 93.8% |
| 3u31A02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.58 | 47.0 | 3.72e-01 | 97.6% | 41.4% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 44.0 | 4.17e-01 | 97.6% | 96.4% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 45.0 | 3.68e-01 | 100.0% | 87.9% |
| 1aw8B00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.56 | 44.0 | 3.64e-01 | 100.0% | 49.5% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 43.0 | 3.51e-01 | 97.6% | 80.0% |
| 5xuhA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 38.0 | 2.81e-01 | 81.0% | 83.2% |
| 3purA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 40.0 | 3.49e-01 | 95.2% | 60.8% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.51 | 43.0 | 2.92e-01 | 100.0% | 63.1% |
| 5suvC00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.51 | 35.0 | 2.66e-01 | 76.2% | 82.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 40.0 | 2.81e-01 | 100.0% | 43.7% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032187 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 66.0 | 6.09e-01 | 100.0% | 89.1% |
| 3277720 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.72 | 54.0 | 5.49e-01 | 100.0% | 90.0% |
| 4083015 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.71 | 55.0 | 5.57e-01 | 97.6% | 95.0% |
| 4136939 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.71 | 55.0 | 5.59e-01 | 100.0% | 97.5% |
| 3908035 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.70 | 37.0 | 2.60e-01 | 88.1% | 16.9% |
| 3397134 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.69 | 52.0 | 4.92e-01 | 100.0% | 68.0% |
| 2393285 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 55.0 | 4.40e-01 | 97.6% | 46.2% |
| 4993851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 52.0 | 5.10e-01 | 100.0% | 84.4% |
| 3389022 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.64 | 49.0 | 4.71e-01 | 100.0% | 72.0% |
| 3574820 | 386.1.1.133 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 | 0.64 | 38.0 | 3.44e-01 | 90.5% | 43.6% |
| 4991835 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 53.0 | 5.08e-01 | 100.0% | 94.0% |
| 3719787 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 49.0 | 5.02e-01 | 97.6% | 95.0% |
| 3721277 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 42.0 | 2.56e-01 | 71.4% | 10.1% |
| 4031664 | 375.1.1.75 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2197 | 0.63 | 48.0 | 4.96e-01 | 88.1% | 97.5% |
| 4583179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 50.0 | 4.75e-01 | 97.6% | 96.4% |
| 3388528 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.62 | 47.0 | 4.76e-01 | 100.0% | 90.0% |
| 3604593 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 50.0 | 4.76e-01 | 100.0% | 80.0% |
| 4979507 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.62 | 50.0 | 3.59e-01 | 100.0% | 29.5% |
| 4151900 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.62 | 50.0 | 3.59e-01 | 100.0% | 29.9% |
| 5030632 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 50.0 | 5.00e-01 | 100.0% | 91.1% |
| 4956150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 50.0 | 4.73e-01 | 100.0% | 76.4% |
| 3890432 | 386.1.1.238 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6 | 0.60 | 36.0 | 3.28e-01 | 90.5% | 41.8% |
| 4993599 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.60 | 48.0 | 3.54e-01 | 100.0% | 32.8% |
| 3522423 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.59 | 35.0 | 2.77e-01 | 90.5% | 27.7% |
| 1170938 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 48.0 | 4.77e-01 | 97.6% | 91.1% |
| 4024079 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.59 | 48.0 | 2.97e-01 | 97.6% | 15.0% |
| 3862602 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.58 | 35.0 | 3.21e-01 | 88.1% | 45.5% |
| 4985088 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.57 | 46.0 | 3.44e-01 | 100.0% | 33.3% |
| 3275036 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 44.0 | 3.88e-01 | 97.6% | 60.0% |
| 3918946 | 386.1.1.312 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met, zf-C2H2_4 | 0.54 | 35.0 | 3.18e-01 | 90.5% | 47.3% |
| 3752890 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 33.0 | 3.26e-01 | 88.1% | 55.6% |
| 1806486 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.53 | 42.0 | 3.99e-01 | 100.0% | 94.7% |
| 4374737 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.53 | 41.0 | 2.62e-01 | 100.0% | 19.8% |
| 3486562 | 386.1.1.242 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_16 | 0.52 | 34.0 | 3.02e-01 | 90.5% | 40.0% |
| 3998354 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 32.0 | 2.54e-01 | 100.0% | 23.2% |
| 4223228 | 101.1.9.21 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N | 0.51 | 44.0 | 3.49e-01 | 100.0% | 96.7% |
D2
medium
residues 97-133
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d79A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.72 | 51.0 | 4.07e-01 | 78.4% | 37.8% |
| 3er6A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.72 | 57.0 | 3.64e-01 | 91.9% | 89.6% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.71 | 60.0 | 4.03e-01 | 97.3% | 91.0% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.71 | 59.0 | 4.21e-01 | 100.0% | 37.5% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 51.0 | 4.56e-01 | 83.8% | 55.9% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.70 | 51.0 | 3.56e-01 | 83.8% | 23.5% |
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.68 | 51.0 | 4.21e-01 | 83.8% | 46.5% |
| 2kvsA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.66 | 51.0 | 4.28e-01 | 100.0% | 82.5% |
| 3kxyT00 | 6.20.290.10 | Special › Other non-globular › Dna Ligase; domain 1 › | 0.63 | 47.0 | 3.93e-01 | 81.1% | 47.7% |
| 5bxhA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.63 | 50.0 | 3.82e-01 | 97.3% | 45.5% |
| 3mzkB03 | 1.20.58.940 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 46.0 | 3.98e-01 | 97.3% | 50.0% |
| 2bmoA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.61 | 48.0 | 2.87e-01 | 91.9% | 43.5% |
| 1z4mA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.60 | 46.0 | 3.21e-01 | 86.5% | 47.5% |
| 4qfeK02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 40.0 | 4.12e-01 | 78.4% | 85.3% |
| 2hyjA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 44.0 | 4.19e-01 | 81.1% | 82.6% |
| 2va8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 39.0 | 3.75e-01 | 97.3% | 92.9% |
| 2cruA01 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.54 | 39.0 | 3.25e-01 | 81.1% | 49.4% |
| 1zkdA03 | 6.10.250.3300 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 36.0 | 3.67e-01 | 83.8% | 72.1% |
| 3ozxA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 2.55e-01 | 100.0% | 15.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3382535 | 568.1.1.2 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › COX17 | 0.77 | 56.0 | 5.51e-01 | 81.1% | 75.0% |
| 3935265 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.75 | 53.0 | 4.82e-01 | 75.7% | 60.0% |
| 3386877 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.71 | 53.0 | 3.49e-01 | 81.1% | 23.7% |
| 3874335 | 110.1.1.7 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 | 0.70 | 51.0 | 3.74e-01 | 81.1% | 34.3% |
| 3545106 | 386.1.1.126 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 | 0.67 | 48.0 | 4.95e-01 | 78.4% | 88.6% |
| 3180118 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 53.0 | 3.29e-01 | 83.8% | 95.7% |
| 1684826 | 1005.1.1.1 ↗ | alpha arrays › Cell-shape determining Csd6 N-terminal dimerization domain › Cell-shape determining Csd6 N-terminal dimerization domain › Cell-shape determining Csd6 N-terminal dimerization domain › Csd6-like_dimeriz | 0.62 | 52.0 | 5.06e-01 | 100.0% | 90.7% |
| 4325353 | 7524.1.1.2 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh | 0.60 | 47.0 | 3.07e-01 | 94.6% | 19.2% |
| 4036241 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.59 | 43.0 | 2.97e-01 | 91.9% | 94.1% |
| 3744764 | 2004.1.1.140 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zeta_toxin | 0.54 | 43.0 | 2.68e-01 | 97.3% | 77.4% |
| 3342211 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.53 | 38.0 | 2.41e-01 | 78.4% | 54.3% |
| 5044999 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.53 | 40.0 | 2.99e-01 | 100.0% | 43.5% |