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H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00610
Bact-VirH2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00610
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-54_66-130_157-197
Domain cluster:
rep: OP947159.1__WBC28288.1__DPMD02_24__00025__D7-135
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.70 | 64.0 | 6.03e-01 | 100.0% | 81.5% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.70 | 61.0 | 5.82e-01 | 100.0% | 80.8% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 46.0 | 4.53e-01 | 100.0% | 63.3% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.67 | 43.0 | 4.93e-01 | 97.8% | 87.9% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.66 | 60.0 | 5.70e-01 | 100.0% | 82.5% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.65 | 60.0 | 5.78e-01 | 100.0% | 89.3% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.64 | 58.0 | 5.67e-01 | 100.0% | 88.4% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 31.0 | 3.65e-01 | 90.3% | 67.8% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 31.0 | 3.83e-01 | 84.3% | 75.9% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.60 | 54.0 | 5.14e-01 | 97.8% | 85.9% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 49.0 | 4.79e-01 | 100.0% | 80.3% |
| 2gujA01 | 2.30.110.40 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Phage tail tube protein | 0.59 | 50.0 | 5.09e-01 | 100.0% | 92.4% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 31.0 | 3.64e-01 | 88.1% | 74.2% |
| 1havB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 38.0 | 4.22e-01 | 99.3% | 86.4% |
| 2x7fC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 33.0 | 3.79e-01 | 97.0% | 79.8% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 31.0 | 3.90e-01 | 82.8% | 91.0% |
| 3ct9A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 31.0 | 3.47e-01 | 84.3% | 66.4% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 30.0 | 3.63e-01 | 87.3% | 82.5% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 51.0 | 4.62e-01 | 100.0% | 74.9% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 31.0 | 3.63e-01 | 83.6% | 77.7% |
| 1cg2A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 31.0 | 3.42e-01 | 83.6% | 66.4% |
| 2cq4A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 28.0 | 3.14e-01 | 70.1% | 62.9% |
| 5xoyB02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 32.0 | 3.51e-01 | 84.3% | 71.0% |
| 6ue9L02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.59e-01 | 87.3% | 68.9% |
| 2yx1A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 34.0 | 3.10e-01 | 99.3% | 47.8% |
| 3gb0A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 31.0 | 3.33e-01 | 88.8% | 67.0% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 36.0 | 3.05e-01 | 98.5% | 42.9% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.52 | 32.0 | 3.82e-01 | 97.8% | 94.2% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.42e-01 | 89.6% | 72.2% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.52 | 43.0 | 4.37e-01 | 97.8% | 89.0% |
| 1qzzA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 35.0 | 3.29e-01 | 98.5% | 55.0% |
| 1txkB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.58e-01 | 88.1% | 76.5% |
| 3qw9B00 | 2.60.40.4100 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain | 0.51 | 38.0 | 3.58e-01 | 87.3% | 63.3% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.51 | 44.0 | 4.47e-01 | 98.5% | 96.2% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 31.0 | 3.30e-01 | 91.0% | 69.0% |
| 3tx8A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 31.0 | 3.33e-01 | 83.6% | 71.9% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.82 | 63.0 | 6.80e-01 | 100.0% | 92.2% |
| 4954552 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.77 | 73.0 | 6.81e-01 | 100.0% | 95.6% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.76 | 66.0 | 6.58e-01 | 100.0% | 88.6% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.75 | 63.0 | 4.92e-01 | 100.0% | 43.7% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.75 | 61.0 | 6.24e-01 | 100.0% | 89.0% |
| 5078836 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 58.0 | 6.33e-01 | 100.0% | 97.3% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.75 | 68.0 | 6.60e-01 | 100.0% | 89.0% |
| 4157825 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 66.0 | 6.71e-01 | 100.0% | 95.4% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.73 | 65.0 | 6.30e-01 | 100.0% | 85.9% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.73 | 68.0 | 6.53e-01 | 100.0% | 90.6% |
| 4954551 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 62.0 | 6.21e-01 | 100.0% | 88.9% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.72 | 66.0 | 6.36e-01 | 100.0% | 92.2% |
| 5079559 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 57.0 | 6.17e-01 | 99.3% | 98.3% |
| 4936076 | 304.8.1.96 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 | 0.71 | 34.0 | 4.17e-01 | 70.9% | 70.6% |
| 4950017 | 304.134.1.3 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › PF26798 | 0.71 | 33.0 | 4.13e-01 | 70.1% | 69.4% |
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.71 | 66.0 | 6.18e-01 | 100.0% | 88.3% |
| 4319369 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.71 | 34.0 | 4.06e-01 | 81.3% | 66.7% |
| 4929752 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.71 | 64.0 | 6.10e-01 | 100.0% | 83.2% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.71 | 66.0 | 6.31e-01 | 100.0% | 89.0% |
| 3388014 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.71 | 33.0 | 4.19e-01 | 70.1% | 73.8% |
| 4947204 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.71 | 56.0 | 5.90e-01 | 100.0% | 93.3% |
| 4938886 | 304.8.1.96 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 | 0.71 | 33.0 | 4.13e-01 | 70.1% | 70.6% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.70 | 64.0 | 6.29e-01 | 100.0% | 91.5% |
| 5004308 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 66.0 | 6.26e-01 | 100.0% | 92.3% |
| 4952629 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 50.0 | 5.74e-01 | 98.5% | 99.0% |
| 2642579 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.70 | 62.0 | 6.29e-01 | 100.0% | 96.9% |
| 80 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.70 | 63.0 | 5.95e-01 | 100.0% | 81.2% |
| 3942090 | 1.1.5.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube | 0.70 | 63.0 | 5.85e-01 | 100.0% | 78.2% |
| 3502370 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.70 | 65.0 | 6.12e-01 | 100.0% | 89.4% |
| 5007296 | 304.8.1.96 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 | 0.70 | 34.0 | 4.15e-01 | 72.4% | 70.0% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 62.0 | 6.30e-01 | 100.0% | 97.7% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.69 | 62.0 | 5.89e-01 | 100.0% | 81.9% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 63.0 | 5.97e-01 | 100.0% | 84.4% |
| 3512169 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.69 | 31.0 | 3.80e-01 | 70.9% | 64.4% |
| 4988100 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 58.0 | 6.03e-01 | 99.3% | 97.6% |
| 3837951 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.68 | 32.0 | 3.81e-01 | 80.6% | 64.4% |
| 3096576 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 63.0 | 5.91e-01 | 100.0% | 86.2% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 62.0 | 4.84e-01 | 100.0% | 48.9% |
| 5002750 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 50.0 | 5.51e-01 | 96.3% | 98.1% |
| 3265120 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 62.0 | 5.65e-01 | 100.0% | 81.1% |
| 1563850 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.66 | 60.0 | 5.70e-01 | 100.0% | 82.5% |
| 3264744 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.66 | 61.0 | 5.57e-01 | 100.0% | 81.1% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.66 | 61.0 | 5.80e-01 | 100.0% | 85.8% |
| 4933189 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.62 | 36.0 | 4.13e-01 | 94.0% | 77.9% |
| 4377299 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.59 | 31.0 | 3.44e-01 | 72.4% | 61.0% |
| 4084501 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.59 | 34.0 | 3.76e-01 | 71.6% | 70.4% |
| 3449841 | 310.3.1.14 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › DUF7049 | 0.56 | 38.0 | 4.40e-01 | 87.3% | 97.9% |
| 2126271 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 32.0 | 3.46e-01 | 91.0% | 64.3% |
| 5004177 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.54 | 45.0 | 4.69e-01 | 98.5% | 96.0% |
| 3279708 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 32.0 | 3.42e-01 | 85.8% | 67.0% |
| 4030972 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.53 | 43.0 | 4.52e-01 | 99.3% | 95.8% |
| 4957584 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.52 | 40.0 | 4.32e-01 | 98.5% | 94.8% |
| 3950626 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 41.0 | 3.46e-01 | 84.3% | 59.1% |
| 5072584 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.52 | 39.0 | 2.96e-01 | 99.3% | 34.7% |
| 4426203 | 868.1.1.2 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase | 0.51 | 36.0 | 2.88e-01 | 70.9% | 54.9% |
| 2642577 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.51 | 44.0 | 4.46e-01 | 99.3% | 94.0% |
| 3781326 | 868.1.1.8 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C | 0.51 | 36.0 | 2.75e-01 | 71.6% | 47.2% |
| 4379611 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.50 | 39.0 | 3.34e-01 | 83.6% | 60.4% |
| 3585212 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.50 | 46.0 | 3.90e-01 | 99.3% | 87.9% |