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H359L
Euk-VirAfrican_swine_fever_virus
H359L__YP_009703169__African_swine_fever_virus__10497
Identity
- Accession:
- YP_009703169 ↗
- Protein ID:
- H359L
- Kingdom:
- euk
Quality
67.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Asfuvirales›
Asfarviridae›
Asfivirus›
African_swine_fever_virus
TaxID: 10497
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-167
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfC02 | 2.170.120.12 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain | 0.83 | 78.0 | 7.10e-01 | 100.0% | 94.4% |
| 6ruiC02 | 2.170.120.12 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain | 0.81 | 76.0 | 6.67e-01 | 100.0% | 95.0% |
| 2pa8D02 | 2.170.120.12 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain | 0.78 | 73.0 | 6.81e-01 | 100.0% | 93.3% |
| 1bdfB02 | 2.170.120.12 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain | 0.75 | 68.0 | 6.30e-01 | 100.0% | 78.7% |
| 4noiA02 | 2.170.120.12 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain | 0.67 | 61.0 | 5.72e-01 | 100.0% | 99.2% |
| 6mkbA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 36.0 | 3.10e-01 | 71.7% | 61.9% |
| 1opoA02 | 2.60.40.1780 | Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein | 0.50 | 34.0 | 3.41e-01 | 99.0% | 67.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4861744 | 240.2.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit | 0.95 | 85.0 | 8.22e-01 | 91.9% | 84.3% |
| 4948405 | 240.2.1.4 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_L | 0.86 | 68.0 | 5.56e-01 | 100.0% | 48.2% |
| 4604120 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.82 | 77.0 | 6.76e-01 | 100.0% | 91.4% |
| 4995400 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.81 | 76.0 | 7.09e-01 | 100.0% | 91.7% |
| 4937884 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.80 | 71.0 | 6.94e-01 | 100.0% | 87.6% |
| 4112651 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.79 | 74.0 | 6.80e-01 | 100.0% | 89.6% |
| 5026826 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.79 | 74.0 | 6.86e-01 | 100.0% | 90.0% |
| 4943253 | 240.2.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit | 0.78 | 74.0 | 6.74e-01 | 100.0% | 88.0% |
| 3717012 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.78 | 73.0 | 6.71e-01 | 100.0% | 91.2% |
| 5059189 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.78 | 73.0 | 6.38e-01 | 100.0% | 89.3% |
| 4026272 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.75 | 66.0 | 5.90e-01 | 99.0% | 69.6% |
| 4563131 | 240.2.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit | 0.74 | 68.0 | 6.34e-01 | 100.0% | 97.5% |
| 4453540 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.73 | 65.0 | 6.08e-01 | 99.0% | 79.2% |
| 4480187 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.73 | 68.0 | 6.05e-01 | 100.0% | 73.3% |
| 4667643 | 240.2.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit | 0.73 | 67.0 | 6.29e-01 | 100.0% | 91.7% |
| 4507610 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.73 | 67.0 | 5.58e-01 | 100.0% | 62.4% |
| 4657592 | 240.2.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac | 0.72 | 66.0 | 6.20e-01 | 100.0% | 82.5% |
| 4607167 | 240.2.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit | 0.72 | 66.0 | 6.25e-01 | 100.0% | 95.7% |
| 4181066 | 240.2.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit | 0.69 | 63.0 | 6.12e-01 | 100.0% | 97.3% |
| 5082408 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 32.0 | 3.22e-01 | 90.9% | 60.0% |
| 3508402 | 11.2.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 | 0.51 | 40.0 | 3.44e-01 | 87.9% | 85.9% |
| 3658097 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.50 | 41.0 | 3.09e-01 | 90.9% | 61.1% |
| 3215715 | 10.12.1.5 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C | 0.50 | 31.0 | 3.00e-01 | 100.0% | 54.5% |
D2
medium
residues 36-68_176-193_213-262_343-359
D3
medium
residues 263-342
Domain cluster:
rep: pH359L__YP_009703392__African_swine_fever_virus__10497__D263-342
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13656.12 best | RNA_pol_L_2 | 41.0 | 1.80e-10 | 81.2% | 82.7% |