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HAM1-like_protein
Euk-VirCassava_brown_streak_virus
HAM1-like_protein__YP_007032446__Cassava_brown_streak_virus__137758
Identity
- Accession:
- YP_007032446 ↗
- Protein ID:
- HAM1-like_protein
- Kingdom:
- euk
Quality
73.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Ipomovirus›
Cassava_brown_streak_virus
TaxID: 137758
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-88_195-213
Domain cluster:
rep: HAM1-like_protein__YP_004063983__Ugandan_cassava_brown_streak_virus__946046__D1-65_112-124
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01725.22 best | Ham1p_like | 38.3 | 1.90e-09 | 82.9% | 35.3% |
D2
medium
residues 89-194
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00394__D55-160
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01725.22 best | Ham1p_like | 117.2 | 1.20e-33 | 100.0% | 59.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2carB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.92 | 87.0 | 6.92e-01 | 100.0% | 55.2% |
| 1b78A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.88 | 84.0 | 6.77e-01 | 100.0% | 57.6% |
| 4bnqB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.87 | 82.0 | 6.55e-01 | 100.0% | 57.8% |
| 1vp2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.85 | 80.0 | 6.44e-01 | 100.0% | 57.7% |
| 6wwdB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.85 | 79.0 | 6.40e-01 | 100.0% | 60.5% |
| 4jhcB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.57 | 48.0 | 4.03e-01 | 100.0% | 53.8% |
| 2amhA00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.56 | 50.0 | 4.13e-01 | 100.0% | 54.9% |
| 4ydzA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 31.0 | 2.91e-01 | 77.4% | 43.7% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.95 | 92.0 | 7.14e-01 | 100.0% | 53.0% | |
| 3681285 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.95 | 91.0 | 7.11e-01 | 100.0% | 53.0% |
| None | — | 0.93 | 89.0 | 7.05e-01 | 100.0% | 54.9% | |
| None | — | 0.93 | 88.0 | 7.11e-01 | 100.0% | 57.8% | |
| 4027541 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.92 | 86.0 | 6.74e-01 | 100.0% | 52.5% |
| 5029274 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.91 | 87.0 | 6.98e-01 | 100.0% | 58.4% |
| None | — | 0.90 | 86.0 | 6.84e-01 | 100.0% | 56.3% | |
| 5046303 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.89 | 83.0 | 6.71e-01 | 100.0% | 55.9% |
| 4890557 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.89 | 82.0 | 6.68e-01 | 100.0% | 57.5% |
| 4961140 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.88 | 82.0 | 6.71e-01 | 100.0% | 57.8% |
| 4947058 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.88 | 84.0 | 6.75e-01 | 100.0% | 57.8% |
| 4974275 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.88 | 78.0 | 6.41e-01 | 100.0% | 55.3% |
| 4938058 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.88 | 80.0 | 6.50e-01 | 100.0% | 55.7% |
| 5026656 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.88 | 83.0 | 6.58e-01 | 100.0% | 55.4% |
| 3962300 | 7504.1.1.0 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like | 0.87 | 83.0 | 6.70e-01 | 100.0% | 60.5% |
| 4943139 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.87 | 83.0 | 6.62e-01 | 100.0% | 56.3% |
| 4887051 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.87 | 81.0 | 6.56e-01 | 100.0% | 56.5% |
| 4402449 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.87 | 82.0 | 6.42e-01 | 100.0% | 55.6% |
| 5051084 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.87 | 82.0 | 6.58e-01 | 100.0% | 57.4% |
| 4064564 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.87 | 82.0 | 6.37e-01 | 100.0% | 59.5% |
| 4107309 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 82.0 | 6.28e-01 | 100.0% | 53.0% |
| 5054101 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 81.0 | 6.52e-01 | 100.0% | 59.5% |
| 4987689 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 81.0 | 6.63e-01 | 100.0% | 58.9% |
| 4968624 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 80.0 | 6.43e-01 | 100.0% | 55.3% |
| 4425733 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.85 | 81.0 | 6.36e-01 | 100.0% | 58.0% |
| 4323146 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.85 | 81.0 | 6.48e-01 | 100.0% | 56.3% |
| 4102271 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.85 | 80.0 | 6.25e-01 | 100.0% | 54.5% |
| 5030104 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.85 | 80.0 | 6.36e-01 | 100.0% | 60.5% |
| 4164014 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.85 | 80.0 | 6.20e-01 | 100.0% | 56.8% |
| 4609162 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.85 | 80.0 | 6.32e-01 | 100.0% | 56.5% |
| 4937425 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.81 | 73.0 | 6.06e-01 | 100.0% | 57.5% |
| 5029482 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 34.0 | 3.88e-01 | 95.3% | 70.0% |
| 1245468 | 391.1.1.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 | 0.62 | 26.0 | 3.78e-01 | 79.2% | 95.2% |
| 3684387 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.62 | 57.0 | 5.29e-01 | 100.0% | 79.2% |
| 4025424 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.59 | 54.0 | 4.31e-01 | 100.0% | 52.2% |
| 3606641 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 35.0 | 3.54e-01 | 98.1% | 58.2% |
| 4654286 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.57 | 51.0 | 4.14e-01 | 100.0% | 53.5% |
| 4167901 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.56 | 51.0 | 4.14e-01 | 100.0% | 53.5% |
| 5048653 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.56 | 50.0 | 4.41e-01 | 99.1% | 82.6% |
| 3960045 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 34.0 | 3.64e-01 | 100.0% | 73.3% |
| 3389979 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 31.0 | 3.04e-01 | 77.4% | 51.7% |