HC-Pro

Euk-Vir

Jasmine_virus_T

HC-Pro__YP_009221984__Jasmine_virus_T__1775963

Identity

85.3 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Jasmine_virus_T

TaxID: 1775963

View cluster (80 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-102

PDB

Domain cluster: rep: HC-Pro__YP_009252411__Tobacco_mosqueado_virus__1792583__D31-64_66-104

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	45.4	8.30e-12	100.0%	15.9%

D2 medium residues 108-172

PDB

Domain cluster: rep: HC-Pro_protein__YP_006405405__Basella_rugose_mosaic_virus__373398__D110-165

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	32.6	6.00e-08	98.5%	13.6%

D3 medium residues 208-274_327-337

PDB

Domain cluster: rep: HC-Pro_protein__NP_871739__Onion_yellow_dwarf_virus__43130__D203-269

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gkuB06	1.10.460.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2	0.50	34.0	2.83e-01	71.8%	62.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5004446	225.2.1.1 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4	0.57	41.0	2.92e-01	75.6%	54.1%
3947936	101.1.2.19 ↗	alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac	0.51	36.0	3.12e-01	75.6%	89.2%

D4 medium residues 275-326_338-456

PDB

Domain cluster: rep: HC-Pro_protein__YP_006590094__Chinese_yam_necrotic_mosaic_virus__128818__D95-261

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	234.3	3.80e-69	100.0%	41.4%