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HC-Pro_protein

Euk-Vir

Sugarcane_mosaic_virus

HC-Pro_protein__NP_734134__Sugarcane_mosaic_virus__12224

Identity

Accession:
NP_734134 ↗
Protein ID:
HC-Pro_protein
Kingdom:
euk

Quality

82.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Sugarcane_mosaic_virus

TaxID: 12224

Cluster

View cluster (80 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-108
PDB
Domain cluster: rep: HC-Pro__YP_009252411__Tobacco_mosqueado_virus__1792583__D31-64_66-104
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 52.0 3.72e-01 92.1% 26.9%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 45.0 3.72e-01 86.8% 37.6%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 48.0 4.90e-01 92.1% 74.7%
1zbpA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 41.0 4.03e-01 92.1% 58.8%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.64 42.0 4.54e-01 84.2% 82.3%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 57.0 5.00e-01 100.0% 82.5%
2pqrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 42.0 3.99e-01 92.1% 57.0%
4pmxA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 55.0 3.65e-01 97.4% 47.1%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.62 49.0 4.53e-01 100.0% 67.7%
6xssA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 39.0 4.03e-01 90.8% 69.6%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 53.0 4.60e-01 100.0% 76.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.61 47.0 4.71e-01 92.1% 81.8%
1evsA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 56.0 4.28e-01 100.0% 58.9%
1zc6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 48.0 3.86e-01 90.8% 89.7%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.59 44.0 4.38e-01 84.2% 78.2%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 51.0 4.66e-01 98.7% 93.1%
1b4pA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 51.0 4.59e-01 97.4% 73.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 44.0 4.50e-01 92.1% 86.5%
1zeeA01 1.20.58.600 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 46.0 4.08e-01 90.8% 69.5%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.57 48.0 4.80e-01 98.7% 92.4%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 50.0 4.56e-01 100.0% 90.5%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 49.0 4.40e-01 100.0% 88.8%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.56 49.0 4.74e-01 100.0% 88.4%
6x6nA01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.55 40.0 3.54e-01 78.9% 91.5%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.55 48.0 4.18e-01 100.0% 72.9%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.54 46.0 4.14e-01 100.0% 81.6%
2j4bB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.53 44.0 3.81e-01 98.7% 81.2%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.53 44.0 3.50e-01 96.1% 44.9%
3zilA00 1.25.10.60 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Rad61, Wapl domain 0.52 46.0 2.98e-01 100.0% 51.7%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.51 40.0 3.92e-01 86.8% 78.3%
4lwsB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 39.0 3.77e-01 82.9% 72.7%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.51 42.0 3.60e-01 92.1% 93.5%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.50 42.0 3.80e-01 100.0% 91.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017740 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 56.0 4.09e-01 98.7% 35.8%
3615307 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 57.0 5.33e-01 100.0% 80.0%
5045529 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 48.0 5.07e-01 90.8% 93.8%
3594871 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 46.0 3.64e-01 90.8% 36.4%
4485359 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.63 43.0 4.01e-01 93.4% 56.8%
4021487 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 42.0 3.62e-01 90.8% 42.4%
4324547 544.1.1.2 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › SRA1 0.61 45.0 4.12e-01 100.0% 58.1%
3821440 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 4.28e-01 97.4% 58.3%
3264732 109.4.1.128 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.61 50.0 3.53e-01 100.0% 28.0%
3721863 109.4.1.217 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fis1_TPR_N,Fis1_TPR_C 0.61 41.0 3.48e-01 92.1% 40.8%
3784313 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.60 41.0 3.94e-01 90.8% 58.9%
4027713 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 52.0 4.99e-01 100.0% 85.6%
3577620 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 52.0 4.60e-01 100.0% 84.3%
3256816 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 45.0 3.63e-01 92.1% 42.0%
3749998 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.58 52.0 4.44e-01 98.7% 80.8%
3484929 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.58 49.0 4.54e-01 96.1% 91.0%
3242447 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 51.0 4.59e-01 98.7% 94.3%
3474685 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.57 50.0 4.42e-01 100.0% 82.6%
4027582 603.1.1.120 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF846 0.57 49.0 4.31e-01 100.0% 67.5%
3497710 109.4.1.1199 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Nup160_C 0.57 52.0 3.46e-01 100.0% 35.9%
3489767 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.57 49.0 4.20e-01 97.4% 74.4%
3259115 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.56 41.0 4.02e-01 84.2% 70.2%
3838730 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.56 46.0 3.63e-01 100.0% 41.1%
3389546 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.56 48.0 4.73e-01 96.1% 90.0%
3559718 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.55 48.0 4.32e-01 100.0% 85.5%
3306390 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.55 49.0 4.41e-01 100.0% 72.4%
3721384 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.55 47.0 3.65e-01 96.1% 73.1%
5023303 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.54 45.0 4.01e-01 96.1% 65.2%
4928054 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.54 45.0 3.01e-01 92.1% 79.0%
3987791 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.52 44.0 3.25e-01 97.4% 96.3%
5061228 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.52 43.0 4.03e-01 96.1% 81.0%
3965294 3558.1.1.0 ↗ alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain 0.52 42.0 3.89e-01 86.8% 76.8%
3705139 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 44.0 3.63e-01 100.0% 85.5%
3710712 109.4.1.1251 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_XPO7 0.50 44.0 3.05e-01 100.0% 50.2%
D2 medium residues 114-169
PDB
Domain cluster: rep: HC-Pro_protein__YP_006405405__Basella_rugose_mosaic_virus__373398__D110-165
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.81 56.0 4.94e-01 73.2% 50.6%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.79 55.0 4.86e-01 73.2% 50.6%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.77 55.0 5.25e-01 75.0% 89.1%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.76 56.0 5.32e-01 78.6% 76.9%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.75 53.0 4.33e-01 75.0% 41.5%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 53.0 3.55e-01 75.0% 22.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 53.0 5.11e-01 76.8% 96.9%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 51.0 4.25e-01 76.8% 41.6%
7zm7601 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.73 59.0 4.18e-01 89.3% 37.1%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 51.0 4.15e-01 75.0% 54.8%
8carA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.72 59.0 3.54e-01 89.3% 54.2%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.71 50.0 4.46e-01 75.0% 53.1%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.71 49.0 3.09e-01 75.0% 89.3%
4ipeB04 1.20.120.790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain 0.70 59.0 4.66e-01 98.2% 69.8%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 49.0 4.59e-01 75.0% 57.5%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.70 49.0 3.80e-01 75.0% 52.0%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.70 58.0 4.38e-01 100.0% 46.4%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.70 60.0 4.50e-01 100.0% 58.6%
4gycA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.67 56.0 3.86e-01 100.0% 36.8%
1b68A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.67 48.0 3.64e-01 76.8% 36.2%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.67 46.0 4.58e-01 75.0% 70.7%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.66 57.0 3.45e-01 96.4% 58.4%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 44.0 3.72e-01 75.0% 39.2%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.64 46.0 3.45e-01 75.0% 36.4%
3ehmA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 54.0 3.35e-01 92.9% 28.8%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 50.0 3.85e-01 89.3% 78.3%
2qk1A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 44.0 2.89e-01 75.0% 17.6%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 54.0 4.05e-01 100.0% 53.1%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.61 45.0 3.88e-01 80.4% 53.8%
6dcjA02 1.25.40.650 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 49.0 4.11e-01 92.9% 53.8%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 42.0 3.86e-01 75.0% 53.8%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.58 47.0 3.70e-01 92.9% 50.0%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 43.0 3.35e-01 83.9% 84.1%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 46.0 4.03e-01 100.0% 56.0%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 44.0 4.07e-01 100.0% 85.2%
2cfuA02 1.25.40.880 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Alkyl sulfatase, dimerisation domain 0.54 45.0 3.44e-01 96.4% 40.4%
5iaiA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 44.0 3.07e-01 96.4% 46.9%
3p5pA03 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 44.0 2.80e-01 92.9% 82.6%
1vibA00 1.10.287.120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like 0.52 37.0 3.73e-01 75.0% 81.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4038138 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.84 58.0 4.36e-01 73.2% 63.8%
4259085 3755.4.1.66 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › MCPsignal 0.81 56.0 3.51e-01 73.2% 94.1%
3998272 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.81 55.0 4.76e-01 71.4% 49.4%
149872 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.80 57.0 5.03e-01 75.0% 62.0%
4937604 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 56.0 4.39e-01 76.8% 47.8%
4500653 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 52.0 3.79e-01 75.0% 27.3%
3282049 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.73 62.0 6.15e-01 100.0% 100.0%
5038395 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.68 60.0 4.37e-01 100.0% 51.6%
5083776 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.67 47.0 4.02e-01 75.0% 50.5%
4601283 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.67 55.0 4.55e-01 96.4% 53.6%
3447427 616.1.1.1 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.66 51.0 3.99e-01 91.1% 45.0%
3876892 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.66 44.0 4.00e-01 73.2% 48.8%
3592972 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 45.0 3.17e-01 73.2% 54.9%
3550195 109.4.1.1361 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CAND1 0.64 46.0 2.68e-01 76.8% 14.9%
3345767 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.64 56.0 4.34e-01 100.0% 71.2%
4099504 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.63 44.0 4.31e-01 73.2% 75.0%
3741609 109.58.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.62 49.0 4.10e-01 85.7% 83.2%
4013459 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 49.0 2.90e-01 89.3% 49.8%
4944409 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 3.55e-01 96.4% 52.6%
5002258 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.59 48.0 4.30e-01 91.1% 80.0%
1503553 3796.1.1.1 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Isd_H_B_linker 0.59 42.0 3.86e-01 75.0% 53.8%
3809254 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.53 41.0 3.98e-01 98.2% 76.9%
D3 medium residues 211-275
PDB
Domain cluster: rep: HC-Pro_protein__NP_871739__Onion_yellow_dwarf_virus__43130__D203-269
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00851.25 best Peptidase_C6 40.2 3.00e-10 98.5% 13.0%
D4 medium residues 276-460
PDB
Domain cluster: rep: HC-Pro_protein__YP_006590094__Chinese_yam_necrotic_mosaic_virus__128818__D95-261
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00851.25 best Peptidase_C6 244.6 3.00e-72 100.0% 41.6%