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HC-Pro_protein
Euk-VirSugarcane_streak_mosaic_virus
HC-Pro_protein__YP_006423935__Sugarcane_streak_mosaic_virus__53954
Identity
- Accession:
- YP_006423935 ↗
- Protein ID:
- HC-Pro_protein
- Kingdom:
- euk
Quality
65.5
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Poacevirus›
Sugarcane_streak_mosaic_virus
TaxID: 53954
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-128
D2
medium
residues 224-290_324-354
Domain cluster:
rep: HC-Pro_protein__YP_002956089__Triticum_mosaic_virus__431317__D222-293
D3
medium
residues 291-323_355-470
Domain cluster:
rep: HC-PRO__NP_734441__Barley_mild_mosaic_virus__12466__D114-229
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00851.25 best | Peptidase_C6 | 71.2 | 1.20e-19 | 89.9% | 27.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rnvA00 | 3.90.70.150 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Helper component proteinase | 0.90 | 68.0 | 7.53e-01 | 77.9% | 95.1% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 33.0 | 3.93e-01 | 75.8% | 81.2% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.58 | 32.0 | 4.08e-01 | 81.2% | 100.0% |
| 2bkoA02 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.50 | 22.0 | 2.92e-01 | 71.1% | 74.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185514 | 219.1.1.7 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C6 | 0.90 | 68.0 | 7.53e-01 | 77.9% | 95.1% |
| 3313848 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.64 | 35.0 | 4.67e-01 | 73.8% | 100.0% |
| 184601 | 633.2.1.1 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun | 0.58 | 32.0 | 4.08e-01 | 81.2% | 100.0% |
| 3588019 | 633.31.1.0 ↗ | alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase | 0.52 | 25.0 | 3.42e-01 | 76.5% | 94.3% |
| 3246398 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.52 | 46.0 | 3.32e-01 | 96.6% | 69.7% |
| 3284055 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.51 | 35.0 | 3.61e-01 | 90.6% | 73.6% |