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HC-Pro_segment

Euk-Vir

Zucchini_tigre_mosaic_virus

HC-Pro_segment__YP_008992246__Zucchini_tigre_mosaic_virus__1406816

Identity

Accession:: YP_008992246 ↗
Protein ID:: HC-Pro_segment
Kingdom:: euk

Quality

86.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Zucchini_tigre_mosaic_virus

TaxID: 1406816

Cluster

View cluster (80 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 112-177

PDB

Domain cluster: rep: HC-Pro_protein__YP_006405405__Basella_rugose_mosaic_virus__373398__D110-165

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	33.0	4.70e-08	98.5%	14.1%

D2 medium residues 31-111

PDB

Domain cluster: representative

CATH (25)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4dyqA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.64	48.0	4.48e-01	81.5%	80.6%
2ikbC00	1.20.141.10	Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1	0.63	53.0	4.36e-01	96.3%	87.6%
2nn4A00	1.10.287.760	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like	0.62	40.0	4.44e-01	84.0%	85.5%
1wjtA00	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.61	43.0	4.07e-01	95.1%	59.2%
2v6kA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.61	52.0	4.45e-01	95.1%	70.8%
1q16C01	1.20.950.20	Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C	0.60	52.0	3.87e-01	97.5%	53.3%
1cunA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	50.0	4.63e-01	93.8%	95.1%
1nigA00	1.20.1200.10	Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like	0.58	50.0	4.17e-01	97.5%	95.9%
3jsbA01	1.20.1440.300	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain	0.57	44.0	4.47e-01	91.4%	82.7%
1dd5A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.57	45.0	4.12e-01	87.7%	84.4%
3dbyL00	1.20.1260.120	Mainly Alpha › Up-down Bundle › Ferritin › Protein of unknown function DUF2935	0.57	48.0	3.43e-01	96.3%	87.3%
1zb1A00	1.25.40.280	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains	0.57	49.0	3.24e-01	100.0%	86.4%
4dciA00	6.10.140.1110	Special › Helix non-globular › Helix Hairpins ›	0.57	40.0	3.32e-01	74.1%	42.9%
1ldjA01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.56	43.0	3.85e-01	87.7%	60.8%
3qkxB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	46.0	3.61e-01	97.5%	72.9%
3k7dA03	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.54	42.0	3.68e-01	88.9%	74.6%
4k7bA00	1.20.120.1740	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like	0.53	40.0	3.73e-01	93.8%	61.3%
2uubT00	1.20.58.110	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20	0.53	45.0	4.29e-01	98.8%	85.9%
1sumB02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.52	45.0	4.05e-01	100.0%	95.8%
4i1eA03	1.25.10.30	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain	0.52	45.0	3.83e-01	98.8%	75.5%
3hyuA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	40.0	3.40e-01	85.2%	86.5%
6qumQ00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.51	34.0	3.59e-01	70.4%	93.2%
5c00D00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.51	35.0	2.80e-01	86.4%	31.4%
2hujA00	1.20.120.440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like	0.50	41.0	3.69e-01	96.3%	73.6%
5lnkJ01	1.20.120.1200	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	0.50	38.0	3.15e-01	96.3%	41.4%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3522050	109.3.1.131 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › INT_SG_DDX_CT_C	0.68	48.0	4.97e-01	95.1%	81.1%
3615307	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.67	60.0	5.70e-01	100.0%	85.3%
3297680	109.52.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › FRIGIDA flowering-time regulator › FRIGIDA flowering-time regulator › Frigida	0.62	54.0	3.68e-01	100.0%	26.0%
3966977	192.29.1.154 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CopD	0.60	51.0	4.22e-01	97.5%	70.8%
5064385	246.2.1.1 ↗	a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos	0.60	49.0	3.38e-01	90.1%	42.7%
1019363	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.59	52.0	4.63e-01	96.3%	97.4%
3689532	3924.1.1.1 ↗	alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2	0.59	46.0	3.53e-01	93.8%	35.5%
3582455	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.58	46.0	4.77e-01	96.3%	98.7%
4972684	150.3.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine	0.58	49.0	4.50e-01	96.3%	80.9%
3277087	192.4.1.0 ↗	alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p)	0.57	46.0	4.38e-01	96.3%	75.8%
3597736	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.55	42.0	4.21e-01	81.5%	96.5%
59125	109.1.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C	0.55	46.0	4.03e-01	96.3%	72.4%
3956325	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	46.0	3.30e-01	100.0%	76.9%
3601998	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.52	36.0	3.07e-01	71.6%	98.5%
4536229	4995.1.1.1 ↗	alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2	0.50	40.0	4.04e-01	87.7%	91.3%

D3 medium residues 188-275_327-339

PDB

Domain cluster: rep: HC-Pro__YP_001936179__Verbena_virus_Y__515446__D186-209_223-267_313-337

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	65.9	5.00e-18	88.1%	18.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kzwA02	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.51	40.0	2.84e-01	84.2%	90.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5018590	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	26.0	2.58e-01	100.0%	41.7%

D4 medium residues 276-326_340-457

PDB

Domain cluster: rep: HC-Pro_protein__YP_006590094__Chinese_yam_necrotic_mosaic_virus__128818__D95-261

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	201.7	3.10e-59	100.0%	41.4%