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HE815464.1__CCH63526.1__X__00064

Bact-Vir

HE815464.1__CCH63526.1__X__00064

Identity

Accession:
HE815464 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-84
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 69.0 6.30e-01 87.5% 78.0%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.71 64.0 5.35e-01 100.0% 63.6%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 58.0 3.76e-01 93.8% 29.0%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 47.0 3.83e-01 73.4% 38.7%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.68 47.0 3.71e-01 73.4% 36.8%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.34e-01 85.9% 94.4%
2jvgA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.67 56.0 5.45e-01 96.9% 86.1%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 49.0 5.20e-01 90.6% 100.0%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 50.0 4.26e-01 87.5% 49.1%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 58.0 4.56e-01 100.0% 88.0%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 58.0 4.44e-01 100.0% 98.6%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.65 44.0 3.48e-01 75.0% 36.9%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.65 45.0 4.06e-01 78.1% 53.5%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 54.0 4.77e-01 93.8% 92.6%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.64 44.0 4.35e-01 71.9% 89.7%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 48.0 4.24e-01 90.6% 55.3%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.63 51.0 4.20e-01 87.5% 73.0%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.63 51.0 3.80e-01 92.2% 33.7%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 44.0 4.14e-01 73.4% 67.5%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 43.0 4.66e-01 81.2% 96.0%
2au3A04 1.20.50.30 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.61 40.0 4.25e-01 76.6% 81.8%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 44.0 4.22e-01 76.6% 68.5%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.61 51.0 4.80e-01 96.9% 94.9%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 3.82e-01 79.7% 57.9%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 45.0 3.29e-01 82.8% 29.8%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 49.0 4.56e-01 93.8% 80.7%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.60 42.0 4.26e-01 89.1% 73.4%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 50.0 4.16e-01 93.8% 79.5%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 4.04e-01 81.2% 63.2%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.60 47.0 3.60e-01 85.9% 39.7%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 49.0 4.32e-01 92.2% 85.6%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 41.0 4.19e-01 73.4% 79.7%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 47.0 4.15e-01 93.8% 93.2%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.58 46.0 4.05e-01 85.9% 90.4%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 3.78e-01 84.4% 93.5%
2qdjA03 1.10.472.140 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.58 45.0 3.80e-01 89.1% 59.5%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.57 46.0 4.09e-01 85.9% 69.3%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.57 45.0 4.00e-01 85.9% 97.8%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 43.0 3.74e-01 82.8% 96.1%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 47.0 3.88e-01 93.8% 73.9%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 43.0 4.32e-01 90.6% 82.1%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 42.0 3.80e-01 87.5% 59.1%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 47.0 4.02e-01 96.9% 88.0%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 47.0 3.99e-01 96.9% 80.9%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.55 36.0 3.89e-01 70.3% 80.0%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 43.0 3.90e-01 100.0% 62.5%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 46.0 3.91e-01 98.4% 89.1%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.53 42.0 4.35e-01 89.1% 98.3%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 4.32e-01 89.1% 93.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3362789 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.79 68.0 5.83e-01 95.3% 61.0%
3269361 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 64.0 4.42e-01 92.2% 27.1%
4385365 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.75 50.0 4.15e-01 82.8% 40.0%
3477799 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.75 62.0 5.82e-01 92.2% 79.5%
3653791 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.74 51.0 4.89e-01 73.4% 69.3%
3577067 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.72 62.0 4.92e-01 95.3% 46.9%
3278306 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.72 60.0 4.51e-01 98.4% 36.5%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.71 58.0 5.96e-01 90.6% 100.0%
4489939 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.71 58.0 5.92e-01 90.6% 100.0%
4424778 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.70 45.0 3.78e-01 82.8% 38.2%
3627089 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.70 58.0 5.44e-01 93.8% 82.5%
5030596 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.70 47.0 4.76e-01 70.3% 76.9%
3534849 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.69 60.0 4.97e-01 96.9% 57.4%
3502846 109.4.1.27 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 0.69 60.0 4.46e-01 100.0% 40.2%
4994947 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.57e-01 96.9% 88.7%
4556778 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.69 58.0 4.87e-01 96.9% 55.7%
3272819 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.68 56.0 4.81e-01 95.3% 56.4%
3243495 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.68 53.0 5.62e-01 87.5% 100.0%
4050022 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.68 52.0 5.44e-01 87.5% 98.2%
4945647 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.67 54.0 4.73e-01 90.6% 97.0%
3919329 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.67 48.0 3.87e-01 75.0% 44.3%
3395281 109.4.1.342 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SBF2 0.66 57.0 4.06e-01 100.0% 31.4%
4214506 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 50.0 5.27e-01 84.4% 100.0%
3927015 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 55.0 4.45e-01 93.8% 48.8%
4147453 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.65 45.0 3.75e-01 78.1% 41.8%
3909706 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 48.0 4.42e-01 79.7% 82.4%
3299258 109.4.1.31 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.65 55.0 4.07e-01 98.4% 35.0%
5074415 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.65 55.0 4.08e-01 100.0% 54.1%
4982919 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 51.0 4.32e-01 93.8% 88.7%
4185536 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.63 50.0 3.02e-01 92.2% 13.6%
3492714 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 50.0 3.72e-01 92.2% 32.2%
3564106 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.62 52.0 4.41e-01 92.2% 89.5%
5044421 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.62 50.0 4.70e-01 92.2% 80.0%
3550609 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.62 52.0 4.43e-01 100.0% 88.7%
4395930 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.62 53.0 3.61e-01 98.4% 35.6%
3269226 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.62 53.0 5.05e-01 95.3% 92.0%
3927781 3065.1.1.2 alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1 0.61 49.0 3.66e-01 92.2% 52.2%
3484930 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.61 51.0 4.30e-01 92.2% 87.6%
3356672 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.60 47.0 3.79e-01 85.9% 95.2%
3270160 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.60 50.0 4.31e-01 92.2% 79.0%
3241028 101.1.2.649 alpha arrays › HTH › HTH › winged helix domain › PF28730 0.60 42.0 3.88e-01 75.0% 60.0%
5033276 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 42.0 3.17e-01 73.4% 34.4%
4160603 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.59 48.0 3.52e-01 90.6% 66.9%
3962961 150.5.1.53 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE 0.58 43.0 4.05e-01 79.7% 65.0%
3519406 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.57 50.0 3.00e-01 100.0% 14.3%
3672432 109.46.1.11 alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40, Beta-prop_IFT122_1st 0.57 49.0 2.99e-01 98.4% 13.6%
3628698 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 50.0 4.11e-01 96.9% 90.4%
3892460 548.1.1.1 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.57 37.0 3.83e-01 76.6% 71.7%
5074957 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 42.0 4.13e-01 79.7% 82.9%
55069 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.56 48.0 4.10e-01 100.0% 88.1%
3604123 632.12.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 0.55 47.0 4.02e-01 93.8% 88.0%
3574755 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.55 46.0 3.79e-01 90.6% 83.6%
4987508 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.52 40.0 3.77e-01 79.7% 70.7%
3930259 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.52 39.0 3.79e-01 84.4% 73.3%