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HE815464.1__CCH63538.1__X__00076

Bact-Vir

HE815464.1__CCH63538.1__X__00076

Identity

Accession:
HE815464 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-148
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.87 55.0 6.41e-01 100.0% 87.1%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.87 54.0 6.09e-01 100.0% 80.0%
1tiqB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 42.0 3.73e-01 78.3% 67.9%
1xebA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.80e-01 79.1% 72.5%
1xf8A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.93e-01 88.7% 76.4%
3up1B01 2.60.40.1870 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 34.0 3.77e-01 86.1% 79.6%
5f47B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 3.79e-01 82.6% 75.7%
6wqbA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 4.04e-01 86.1% 75.7%
1s3zA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 40.0 3.71e-01 80.0% 74.8%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 38.0 3.58e-01 75.7% 70.9%
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.53 36.0 4.03e-01 85.2% 93.1%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.30e-01 86.1% 44.4%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 42.0 3.00e-01 88.7% 80.8%
6x0oA01 2.60.120.610 Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain 0.52 43.0 3.87e-01 89.6% 83.7%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.51 37.0 3.03e-01 75.7% 95.1%
2vi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 38.0 3.43e-01 79.1% 68.7%
4ltyA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 42.0 3.22e-01 93.0% 92.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
358962 4401.1.1.1 a+b complex topology › Domain II in tail sheath protein Gp18 › Domain II in tail sheath protein Gp18 › Domain II in tail sheath protein Gp18 › Phage_sheath_domII 0.83 79.0 6.81e-01 100.0% 71.4%
3931156 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 36.0 4.45e-01 77.4% 88.6%
136506 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.64 45.0 4.78e-01 93.0% 83.8%
3395408 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 35.0 3.66e-01 78.3% 58.2%
5008207 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 37.0 4.31e-01 92.2% 86.3%
3435374 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 35.0 4.04e-01 79.1% 77.6%
3432658 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 36.0 3.93e-01 80.9% 74.7%
3211606 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 33.0 3.82e-01 89.6% 77.6%
3176851 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.56 39.0 3.86e-01 72.2% 73.6%
3599323 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.55 35.0 3.92e-01 76.5% 82.2%
4945717 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 41.0 3.90e-01 83.5% 67.4%
3242699 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 44.0 3.93e-01 87.0% 63.2%
3512065 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 27.0 3.55e-01 74.8% 86.2%
3995397 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 33.0 3.76e-01 89.6% 82.4%
5042577 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 34.0 4.18e-01 78.3% 100.0%
1721893 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 41.0 3.79e-01 82.6% 75.7%
5053668 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 44.0 3.83e-01 89.6% 70.0%
4974426 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 39.0 3.47e-01 78.3% 66.1%
4345013 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.52 45.0 4.02e-01 93.0% 86.3%
144144 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.52 41.0 2.96e-01 88.7% 80.5%
3615430 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 40.0 4.24e-01 80.0% 92.0%
5073244 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 43.0 3.84e-01 90.4% 77.6%
4990901 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 31.0 3.86e-01 75.7% 98.6%
D2 high residues 159-310
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04984.20 best Phage_sheath_1 31.6 1.90e-07 96.0% 49.4%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3foaB01 3.40.50.11780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.87 77.0 6.65e-01 91.4% 66.4%
5ybwA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 40.0 4.88e-01 73.0% 93.9%
1h2bA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 38.0 3.94e-01 75.0% 61.4%
2ixtA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.63 59.0 4.61e-01 100.0% 63.4%
4o1eB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.60 44.0 3.72e-01 98.7% 43.4%
2i9uA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.60 46.0 3.67e-01 80.3% 86.0%
3bl4A01 3.40.1680.10 Alpha Beta › 3-Layer(aba) Sandwich › yp_829618.1 fold › yp_829618.1 domain like 0.59 25.0 3.50e-01 75.0% 80.6%
2pueA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 34.0 3.52e-01 83.6% 59.2%
4inaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 48.0 4.42e-01 88.8% 81.1%
2gpyB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 40.0 3.68e-01 86.8% 56.2%
2fepA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 31.0 3.26e-01 99.3% 55.7%
3u62A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 36.0 3.86e-01 86.8% 74.2%
2pljA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.56 39.0 3.47e-01 100.0% 48.0%
1xp3A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 46.0 3.71e-01 89.5% 64.6%
5bn7A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 42.0 3.15e-01 78.9% 86.2%
2efjA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 39.0 3.49e-01 73.0% 69.2%
1o0uA02 3.40.50.10180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycerate kinase, MOFRL-like N-terminal domain 0.54 40.0 3.52e-01 89.5% 51.5%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 39.0 3.55e-01 75.0% 54.8%
1o6cB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 45.0 3.99e-01 89.5% 95.9%
1ur3M00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.54 44.0 3.53e-01 100.0% 44.8%
3x0dA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 39.0 3.97e-01 86.8% 76.8%
3tm4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 3.54e-01 86.8% 62.3%
1zunA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 36.0 3.38e-01 72.4% 55.2%
5cheA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 37.0 3.78e-01 75.0% 73.7%
1jsxA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 3.42e-01 75.7% 57.0%
4q9aA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 39.0 3.50e-01 78.9% 90.9%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 38.0 3.74e-01 75.0% 71.9%
6qkgA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 47.0 3.48e-01 100.0% 51.6%
1oi2A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.51 41.0 3.98e-01 87.5% 100.0%
3c48A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 38.0 3.42e-01 78.9% 91.3%
3dtnA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 3.39e-01 73.0% 62.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888782 2499.2.1.2 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.92 86.0 6.76e-01 96.1% 69.1%
4995822 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.90 87.0 7.08e-01 100.0% 61.6%
4882286 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.84 69.0 6.99e-01 90.1% 86.1%
3978226 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.83 80.0 6.30e-01 100.0% 61.1%
5004680 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.83 79.0 6.30e-01 100.0% 58.9%
3944167 2499.2.1.2 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.82 78.0 6.29e-01 100.0% 60.4%
1518917 2499.2.1.2 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.79 75.0 6.04e-01 100.0% 59.7%
2468538 2499.2.1.0 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 0.76 72.0 5.89e-01 100.0% 61.9%
4046369 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.67 43.0 3.91e-01 73.0% 49.0%
3485507 2004.1.1.230 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like 0.61 46.0 4.03e-01 78.3% 75.1%
3300965 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.60 45.0 3.75e-01 78.3% 59.1%
3655024 2003.1.2.205 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › PF27704 0.60 36.0 4.33e-01 74.3% 93.7%
391008 2003.6.1.5 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.59 48.0 3.96e-01 88.8% 70.5%
3498662 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.58 42.0 3.46e-01 75.0% 86.4%
3964181 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.57 41.0 3.42e-01 74.3% 49.0%
3997482 2002.1.1.290 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 0.56 43.0 4.04e-01 81.6% 95.8%
5000532 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 46.0 4.16e-01 94.7% 65.9%
5074642 2003.1.5.35 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.55 41.0 3.29e-01 86.8% 41.1%
5026592 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.55 41.0 3.75e-01 78.3% 66.0%
4945079 7512.1.1.8 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.55 40.0 3.74e-01 77.0% 96.4%
1296531 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 39.0 4.19e-01 73.0% 90.6%
4941583 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 36.0 3.45e-01 100.0% 56.1%
4960344 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 41.0 3.59e-01 79.6% 56.1%
3579265 7577.1.1.3 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 0.54 28.0 2.48e-01 73.0% 33.0%
3584637 7579.1.1.21 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Ndr 0.54 44.0 3.93e-01 88.2% 100.0%
4870208 2003.1.5.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.54 39.0 3.46e-01 75.7% 52.9%
4403740 2007.5.1.1 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.53 40.0 3.52e-01 78.9% 73.8%
3281453 2003.1.5.163 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2, Methyltransf_25 0.53 39.0 3.28e-01 75.7% 46.3%
408985 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.52 38.0 3.37e-01 100.0% 52.1%
4560974 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.52 42.0 4.43e-01 86.2% 96.2%
4026032 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.52 41.0 4.26e-01 86.8% 90.0%
4974737 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 38.0 3.16e-01 86.8% 44.9%
5003387 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 38.0 3.77e-01 78.9% 75.0%