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HE956708.2__CCI88460.1__BN79_032__00038

Bact-Vir

HE956708.2__CCI88460.1__BN79_032__00038

Identity

Accession:
HE956708 ↗
Kingdom:
phage

Quality

70.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Epseptimavirus› Yersinia_phage_phiR2-01

TaxID: 1206557

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-39
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 47.0 4.39e-01 100.0% 59.5%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 45.0 3.30e-01 90.6% 33.3%
3hh2D04 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 40.0 3.38e-01 93.8% 38.6%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 38.0 2.64e-01 100.0% 59.4%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 38.0 3.15e-01 100.0% 32.3%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.54 40.0 3.30e-01 84.4% 78.5%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 38.0 3.66e-01 100.0% 64.1%
5n1qB02 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 2.59e-01 84.4% 28.6%
3f1sB01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.53 37.0 3.55e-01 96.9% 60.8%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 41.0 3.61e-01 100.0% 71.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4191162 385.1.1.1 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot 0.67 50.0 3.97e-01 100.0% 97.6%
3231480 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.63 44.0 4.10e-01 78.1% 62.2%
3908615 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.62 46.0 4.03e-01 100.0% 50.0%
3483119 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.56 39.0 3.76e-01 71.9% 62.5%
6441 243.6.1.8 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.54 40.0 3.29e-01 84.4% 77.3%
4941478 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 40.0 3.58e-01 100.0% 81.8%