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HE956708.2__CCI88573.1__BN79_164__00152

Bact-Vir

HE956708.2__CCI88573.1__BN79_164__00152

Identity

Accession:
HE956708 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Epseptimavirus› Yersinia_phage_phiR2-01

TaxID: 1206557

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-84
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.40e-01 85.2% 84.7%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 57.0 3.81e-01 86.9% 39.3%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 49.0 5.18e-01 73.8% 100.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.69 55.0 4.08e-01 86.9% 51.0%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 52.0 3.87e-01 88.5% 41.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.69e-01 85.2% 68.8%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 50.0 3.78e-01 86.9% 53.3%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.64 52.0 3.69e-01 93.4% 29.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.67e-01 85.2% 73.7%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.63 55.0 4.32e-01 100.0% 74.4%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.90e-01 85.2% 88.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.98e-01 86.9% 87.1%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.62 48.0 3.70e-01 86.9% 51.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.61e-01 86.9% 83.3%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.61 43.0 3.49e-01 75.4% 43.8%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 43.0 3.26e-01 73.8% 58.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.61 51.0 5.08e-01 100.0% 92.1%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 49.0 3.81e-01 93.4% 82.2%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 43.0 4.58e-01 77.0% 94.2%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.07e-01 86.9% 65.2%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 4.00e-01 88.5% 68.3%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 42.0 4.44e-01 77.0% 94.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.56e-01 85.2% 87.1%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 47.0 3.82e-01 90.2% 71.9%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.63e-01 85.2% 89.7%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 41.0 4.11e-01 77.0% 76.6%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.16e-01 100.0% 90.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 41.0 4.18e-01 77.0% 86.4%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.19e-01 85.2% 77.0%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 41.0 3.10e-01 75.4% 44.8%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 47.0 4.01e-01 95.1% 73.1%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.57 43.0 3.67e-01 85.2% 80.6%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 40.0 4.11e-01 77.0% 87.5%
3if9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.16e-01 96.7% 67.0%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 3.40e-01 91.8% 57.0%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.44e-01 93.4% 78.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 45.0 3.17e-01 96.7% 69.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 3.52e-01 100.0% 75.2%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.62e-01 90.2% 69.5%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.15e-01 100.0% 91.7%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.49e-01 93.4% 98.2%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 2.82e-01 85.2% 82.4%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.42e-01 96.7% 83.3%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 2.91e-01 77.0% 75.8%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 42.0 3.14e-01 98.4% 56.4%
4m69A00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 38.0 2.54e-01 86.9% 26.8%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 4.72e-01 88.5% 56.9%
3670066 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.75 60.0 4.39e-01 86.9% 48.4%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 5.22e-01 88.5% 76.8%
4427420 4.1.1.436 ↗ beta barrels › SH3 › SH3 › SH3 › PF29249 0.74 61.0 5.52e-01 88.5% 83.7%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.73 58.0 4.45e-01 86.9% 55.1%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.42e-01 86.9% 92.7%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.68 54.0 3.99e-01 86.9% 41.3%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.05e-01 85.2% 85.7%
3683602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.53e-01 75.4% 68.0%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 53.0 4.89e-01 86.9% 76.2%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.67 52.0 3.87e-01 88.5% 41.0%
3582834 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.67 54.0 4.75e-01 91.8% 68.4%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.67 56.0 4.48e-01 93.4% 51.7%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.66 56.0 5.26e-01 93.4% 78.7%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 3.55e-01 86.9% 28.9%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.27e-01 85.2% 88.3%
3482706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.15e-01 96.7% 94.1%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.31e-01 86.9% 90.0%
3218545 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 52.0 4.66e-01 86.9% 91.8%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.65 51.0 3.81e-01 86.9% 39.4%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.10e-01 85.2% 86.7%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.85e-01 86.9% 75.7%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.64 50.0 3.74e-01 86.9% 38.7%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 49.0 4.10e-01 86.9% 55.6%
4174957 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 47.0 3.43e-01 86.9% 39.0%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.62 49.0 4.51e-01 86.9% 76.2%
4040055 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.62 43.0 4.43e-01 73.8% 84.5%
3259422 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.13e-01 100.0% 73.6%
3961663 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.62 47.0 4.01e-01 85.2% 58.1%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.61 52.0 4.39e-01 100.0% 81.8%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.61 51.0 4.77e-01 100.0% 75.0%
3631669 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 46.0 2.93e-01 83.6% 32.9%
3196565 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 51.0 3.31e-01 100.0% 60.0%
3555102 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 50.0 4.16e-01 100.0% 88.3%
5061113 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.59 41.0 4.33e-01 73.8% 89.1%
4383895 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 47.0 3.04e-01 90.2% 27.7%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 3.97e-01 85.2% 55.8%
3926219 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 46.0 2.94e-01 91.8% 29.9%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.21e-01 86.9% 81.2%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.58 45.0 3.80e-01 85.2% 50.5%
3624726 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 48.0 3.05e-01 96.7% 27.2%
3646145 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 46.0 2.88e-01 91.8% 21.6%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 45.0 3.99e-01 88.5% 66.3%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.58 46.0 4.59e-01 93.4% 86.2%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.07e-01 86.9% 78.6%
5008350 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 48.0 4.43e-01 98.4% 71.2%
3289119 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 44.0 2.73e-01 100.0% 13.8%
4530545 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.57 44.0 3.81e-01 85.2% 83.2%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.56 43.0 3.87e-01 85.2% 87.8%
3517484 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 48.0 3.01e-01 100.0% 34.9%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.42e-01 93.4% 87.1%
4952973 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.56 46.0 4.08e-01 93.4% 68.9%
4994895 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.56 45.0 4.22e-01 93.4% 76.2%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.56 45.0 3.92e-01 100.0% 87.3%
5026284 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.55 43.0 3.82e-01 88.5% 66.3%
4968081 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.55 38.0 4.03e-01 73.8% 89.1%
5054413 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.55 45.0 3.83e-01 91.8% 87.4%
3782416 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 44.0 2.73e-01 91.8% 20.7%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 44.0 4.02e-01 93.4% 74.1%
5062756 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 38.0 4.13e-01 73.8% 98.0%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.54 46.0 4.74e-01 100.0% 100.0%
4114383 4.8.1.47 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 0.53 40.0 3.69e-01 85.2% 92.9%
5080798 4.17.1.0 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.53 45.0 4.27e-01 100.0% 88.0%
3240335 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.53 44.0 2.96e-01 96.7% 34.2%
3974565 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.53 35.0 3.53e-01 73.8% 66.2%
4627416 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.53 36.0 3.54e-01 73.8% 64.3%
3939142 206.1.1.78 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.52 42.0 2.66e-01 96.7% 25.5%
2557227 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.51 39.0 3.75e-01 90.2% 85.7%