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HE983845.1__CCM43655.1__BN405_2-10_Ab1_orf_111__00111
Bact-VirHE983845.1__CCM43655.1__BN405_2-10_Ab1_orf_111__00111
Identity
- Accession:
- HE983845 ↗
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Pakpunavirus›
Pseudomonas_phage_vB_PaeM_C2-10_Ab1
TaxID: 1231048
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-88
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cfuA03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.67 | 40.0 | 3.14e-01 | 90.3% | 28.7% |
| 4e6zA01 | 3.40.1350.100 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.65 | 58.0 | 4.81e-01 | 100.0% | 61.5% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 48.0 | 4.04e-01 | 91.9% | 88.4% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 50.0 | 4.43e-01 | 93.5% | 95.5% |
| 1dmrA03 | 3.90.55.10 | Alpha Beta › Alpha-Beta Complex › Dimethylsulfoxide Reductase; domain 3 › Dimethylsulfoxide Reductase, domain 3 | 0.58 | 42.0 | 3.78e-01 | 77.4% | 65.5% |
| 2hhpA03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.57 | 48.0 | 3.72e-01 | 98.4% | 92.1% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 47.0 | 4.34e-01 | 95.2% | 85.4% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 3.87e-01 | 95.2% | 99.2% |
| 2zw2A00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.57 | 46.0 | 4.19e-01 | 91.9% | 100.0% |
| 3wnzA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.56 | 44.0 | 4.00e-01 | 90.3% | 62.0% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 46.0 | 3.92e-01 | 95.2% | 100.0% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 38.0 | 3.70e-01 | 91.9% | 65.3% |
| 3psfA03 | 1.10.3500.10 | Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like | 0.54 | 45.0 | 2.95e-01 | 98.4% | 21.5% |
| 3d00A01 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.53 | 33.0 | 2.49e-01 | 85.5% | 24.8% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.75e-01 | 100.0% | 93.0% |
| 7c51A01 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.53 | 39.0 | 3.31e-01 | 82.3% | 45.9% |
| 3tmgA02 | 3.40.190.100 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2 | 0.53 | 42.0 | 3.56e-01 | 88.7% | 80.7% |
| 2hjiA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 37.0 | 2.88e-01 | 77.4% | 73.1% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.61e-01 | 82.3% | 93.8% |
| 3tp2B02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 41.0 | 3.71e-01 | 98.4% | 100.0% |
| 3ty5A01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.51 | 41.0 | 2.65e-01 | 93.5% | 57.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3886475 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.70 | 58.0 | 6.11e-01 | 98.4% | 100.0% |
| 3704338 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.67 | 57.0 | 4.04e-01 | 96.8% | 44.6% |
| 2579422 | 4326.1.1.1 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like › ER | 0.65 | 56.0 | 4.95e-01 | 100.0% | 73.4% |
| 4022883 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.63 | 50.0 | 3.38e-01 | 93.5% | 26.3% |
| 5029117 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 51.0 | 4.32e-01 | 95.2% | 80.0% |
| 3475182 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.61 | 49.0 | 3.42e-01 | 87.1% | 61.0% |
| 5015865 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.61 | 49.0 | 3.82e-01 | 90.3% | 51.4% |
| 5049120 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.59 | 49.0 | 3.63e-01 | 91.9% | 45.6% |
| 4990094 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.58 | 45.0 | 4.40e-01 | 85.5% | 100.0% |
| 3196674 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.58 | 46.0 | 3.83e-01 | 91.9% | 100.0% |
| 4618627 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.57 | 43.0 | 3.64e-01 | 80.6% | 53.8% |
| 3483850 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 48.0 | 4.17e-01 | 100.0% | 97.0% |
| 5016388 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 46.0 | 4.18e-01 | 95.2% | 100.0% |
| 5192 | 304.4.1.28 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF6974 | 0.55 | 46.0 | 3.88e-01 | 95.2% | 98.2% |
| 3788498 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.55 | 47.0 | 3.15e-01 | 100.0% | 50.0% |
| 3635748 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.54 | 46.0 | 3.82e-01 | 100.0% | 99.2% |
| 3540023 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.54 | 46.0 | 4.13e-01 | 98.4% | 93.3% |
| 3499263 | 11.1.1.230 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YBD | 0.54 | 46.0 | 3.42e-01 | 100.0% | 43.4% |
| None | — | 0.53 | 38.0 | 2.77e-01 | 77.4% | 65.0% | |
| 5075567 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.53 | 42.0 | 3.61e-01 | 91.9% | 99.1% |
| 3448933 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.53 | 42.0 | 3.62e-01 | 98.4% | 90.0% |
| 3251743 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.53 | 45.0 | 4.16e-01 | 100.0% | 97.6% |
| 3555970 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.51 | 35.0 | 2.69e-01 | 75.8% | 71.2% |