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HF569090.1__CCP51170.1__X__00054
Bact-VirHF569090.1__CCP51170.1__X__00054
Identity
- Accession:
- HF569090 ↗
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Taxonomy
TaxID: 1277895
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 188-228
D2
medium
residues 1-75_129-169
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00413__D1-92
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.59 | 53.0 | 4.19e-01 | 98.3% | 78.4% |
| 5mz2I00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.57 | 44.0 | 4.15e-01 | 91.4% | 67.6% |
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.53 | 43.0 | 4.22e-01 | 92.2% | 82.9% |
D3
medium
residues 76-128_170-182
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09250.17 best | Prim-Pol | 28.8 | 2.10e-06 | 98.5% | 34.8% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 46.0 | 4.31e-01 | 98.5% | 69.0% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.57 | 49.0 | 3.79e-01 | 100.0% | 42.1% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.57 | 42.0 | 4.04e-01 | 97.0% | 67.9% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 3.82e-01 | 98.5% | 62.2% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.56 | 43.0 | 4.11e-01 | 98.5% | 70.7% |
| 3uc4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 39.0 | 3.66e-01 | 75.8% | 84.7% |
| 3pqvC01 | 3.65.10.20 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain | 0.55 | 40.0 | 2.75e-01 | 80.3% | 32.5% |
| 4lubB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 41.0 | 3.67e-01 | 84.8% | 97.0% |
| 1l1lA03 | 3.90.1390.10 | Alpha Beta › Alpha-Beta Complex › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 | 0.54 | 46.0 | 4.16e-01 | 100.0% | 83.0% |
| 5fiiB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 41.0 | 3.99e-01 | 98.5% | 76.9% |
| 3mk6B01 | 3.30.420.510 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 44.0 | 3.50e-01 | 100.0% | 50.3% |
| 2vfrA03 | 3.30.70.2530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.63e-01 | 98.5% | 63.2% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 41.0 | 3.71e-01 | 97.0% | 62.5% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 44.0 | 3.88e-01 | 98.5% | 65.3% |
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 42.0 | 4.00e-01 | 97.0% | 76.8% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.86e-01 | 98.5% | 72.9% |
| 3dxqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 36.0 | 3.44e-01 | 77.3% | 74.7% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.76e-01 | 98.5% | 69.8% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.69e-01 | 98.5% | 67.6% |
| 4hl9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.82e-01 | 98.5% | 70.2% |
| 1x7vA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.80e-01 | 100.0% | 73.5% |
| 2qyxB01 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.50 | 38.0 | 3.34e-01 | 86.4% | 86.2% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 38.0 | 3.56e-01 | 98.5% | 63.8% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.75e-01 | 97.0% | 70.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 138899 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 41.0 | 3.97e-01 | 98.5% | 68.8% |
| 4955747 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.56 | 47.0 | 4.10e-01 | 100.0% | 60.0% |
| 4996908 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.55 | 44.0 | 4.12e-01 | 98.5% | 70.5% |
| 1759952 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.55 | 42.0 | 3.79e-01 | 98.5% | 57.8% |
| 5042067 | 304.4.1.84 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › CAA_C | 0.55 | 40.0 | 2.99e-01 | 80.3% | 42.6% |
| 3599868 | 241.5.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA | 0.54 | 45.0 | 3.82e-01 | 100.0% | 55.2% |
| 5050934 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.54 | 41.0 | 4.15e-01 | 98.5% | 89.2% |
| 4991606 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.54 | 41.0 | 3.93e-01 | 97.0% | 72.5% |
| 3218711 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.53 | 45.0 | 3.95e-01 | 100.0% | 63.8% |
| 3200904 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.52 | 40.0 | 3.92e-01 | 97.0% | 76.0% |
| 4954601 | 304.8.1.12 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 | 0.52 | 40.0 | 3.91e-01 | 98.5% | 76.0% |
| 4196765 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 42.0 | 4.14e-01 | 98.5% | 87.1% |
| 3466526 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 39.0 | 3.95e-01 | 98.5% | 84.4% |
| 5025196 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.51 | 40.0 | 3.86e-01 | 98.5% | 73.8% |
| 3641594 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 43.0 | 3.48e-01 | 98.5% | 87.9% |
| 1309075 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.51 | 43.0 | 3.54e-01 | 100.0% | 85.9% |
| 4162516 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.51 | 39.0 | 3.50e-01 | 97.0% | 55.2% |
| 4963839 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 37.0 | 3.46e-01 | 97.0% | 61.2% |
| 3365317 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 42.0 | 4.04e-01 | 100.0% | 80.0% |
| 4648926 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 43.0 | 3.20e-01 | 98.5% | 61.6% |
| 3215882 | 304.8.1.72 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP | 0.51 | 42.0 | 3.89e-01 | 98.5% | 72.2% |
| 4933713 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.50 | 40.0 | 4.12e-01 | 100.0% | 89.2% |
| 137323 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.50 | 41.0 | 3.69e-01 | 98.5% | 67.6% |
| 4341311 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.50 | 43.0 | 3.93e-01 | 100.0% | 71.1% |
| 5037613 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.50 | 42.0 | 4.05e-01 | 98.5% | 81.0% |
| 3662730 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 43.0 | 2.84e-01 | 100.0% | 47.0% |
| 4956118 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.50 | 40.0 | 3.82e-01 | 100.0% | 74.1% |