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HG796221.1__CDL65279.1__X__00042

Bact-Vir

HG796221.1__CDL65279.1__X__00042

Identity

Accession:
HG796221 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 116-194
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.72 57.0 3.41e-01 84.8% 14.2%
3vsmA02 2.70.98.100 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 0.67 49.0 3.65e-01 75.9% 76.6%
3khyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 42.0 3.12e-01 74.7% 28.0%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.63 51.0 4.00e-01 88.6% 49.1%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 40.0 2.99e-01 70.9% 27.0%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.58 41.0 3.40e-01 74.7% 62.8%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.55 46.0 3.91e-01 89.9% 81.1%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.65e-01 86.1% 89.1%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 39.0 3.18e-01 75.9% 94.8%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.54 45.0 3.17e-01 100.0% 62.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 38.0 3.27e-01 75.9% 47.5%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.53 38.0 3.33e-01 74.7% 51.3%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.69e-01 83.5% 80.3%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 38.0 2.51e-01 77.2% 63.9%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.52 36.0 3.31e-01 72.2% 75.5%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.52 39.0 3.33e-01 82.3% 70.0%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 41.0 2.76e-01 88.6% 51.3%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.76e-01 87.3% 67.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3916473 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 52.0 4.76e-01 82.3% 95.0%
3216869 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.66 57.0 4.30e-01 96.2% 40.0%
5015593 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.63 45.0 3.98e-01 75.9% 65.0%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 43.0 3.00e-01 73.4% 47.0%
3973036 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 43.0 3.35e-01 77.2% 33.0%
3740435 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.60 51.0 3.46e-01 100.0% 79.7%
3254674 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.58 50.0 3.27e-01 97.5% 44.7%
3232560 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.57 45.0 3.06e-01 84.8% 97.3%
3315971 708.1.1.2 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.57 39.0 3.61e-01 72.2% 84.8%
2802354 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 48.0 3.39e-01 100.0% 84.1%
3999888 4018.1.1.0 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases 0.53 43.0 3.69e-01 89.9% 85.4%
3990074 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.53 40.0 3.67e-01 81.0% 88.6%
4258908 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.51 38.0 3.22e-01 79.7% 70.0%
3937102 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 37.0 2.90e-01 78.5% 43.3%
D2 high residues 235-290
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.76 63.0 4.53e-01 100.0% 32.9%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 57.0 4.06e-01 85.7% 48.5%
2q74A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.69 59.0 4.63e-01 100.0% 49.6%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.69 57.0 3.58e-01 92.9% 99.4%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.68 59.0 4.48e-01 100.0% 74.8%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.67 59.0 4.28e-01 100.0% 49.7%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 47.0 2.91e-01 80.4% 13.2%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.53e-01 92.9% 95.1%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.66 54.0 4.25e-01 94.6% 43.2%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 57.0 3.65e-01 100.0% 83.4%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.65 56.0 3.76e-01 100.0% 25.7%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.64 45.0 3.53e-01 76.8% 35.0%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.63 55.0 3.56e-01 100.0% 41.8%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.63 49.0 3.98e-01 83.9% 56.7%
1fm2B01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 54.0 3.47e-01 100.0% 34.0%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.61 53.0 4.13e-01 100.0% 74.8%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 39.0 3.60e-01 73.2% 49.3%
1g0hA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.60 51.0 3.95e-01 100.0% 68.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.80e-01 78.6% 72.4%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.27e-01 100.0% 36.7%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.12e-01 96.4% 38.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.79e-01 75.0% 75.7%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 49.0 3.62e-01 100.0% 57.0%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 39.0 3.26e-01 75.0% 74.8%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 39.0 3.44e-01 76.8% 68.5%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 41.0 3.13e-01 89.3% 57.9%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.10e-01 75.0% 51.5%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.51 42.0 3.27e-01 89.3% 92.6%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.66e-01 98.2% 78.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3713206 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.76 67.0 5.04e-01 100.0% 44.4%
3231343 77.1.1.10 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.76 64.0 4.88e-01 100.0% 40.8%
3271259 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.73 58.0 5.06e-01 91.1% 57.6%
3504473 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.72 61.0 4.27e-01 100.0% 29.4%
4030652 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.72 57.0 4.23e-01 100.0% 33.3%
5067232 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.70 60.0 4.53e-01 100.0% 45.5%
3978651 241.13.1.1 a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif 0.70 55.0 4.50e-01 87.5% 46.7%
5082792 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.69 59.0 4.44e-01 98.2% 45.5%
4030498 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.69 61.0 4.48e-01 100.0% 60.7%
3972476 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.68 59.0 4.44e-01 100.0% 44.8%
4074315 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.68 54.0 3.79e-01 87.5% 31.4%
5046191 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.67 58.0 4.25e-01 100.0% 41.2%
4995814 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.66 57.0 4.15e-01 100.0% 48.1%
4300905 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.64 54.0 3.85e-01 100.0% 45.3%
5042555 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.64 55.0 4.14e-01 100.0% 44.1%
441013 79.1.1.1 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_C 0.64 50.0 3.36e-01 85.7% 21.9%
3163656 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.60 48.0 3.02e-01 91.1% 76.4%
3482868 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 41.0 4.17e-01 71.4% 87.3%
3584364 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 38.0 4.02e-01 75.0% 74.0%
3570173 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.58 41.0 3.26e-01 75.0% 66.1%
3256679 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 50.0 4.58e-01 100.0% 94.7%
2629648 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 39.0 3.35e-01 75.0% 71.7%
3632963 844.1.1.3 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF6593 0.56 45.0 3.42e-01 100.0% 35.2%
4927267 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.55 38.0 4.08e-01 71.4% 100.0%
3391302 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 42.0 2.76e-01 91.1% 43.3%
3325087 1.1.1.28 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.54 42.0 2.60e-01 89.3% 99.0%
3465240 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.89e-01 100.0% 35.0%
3302402 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 32.0 2.69e-01 71.4% 31.0%
1411067 244.2.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.53 39.0 3.51e-01 78.6% 56.4%
3321408 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 36.0 3.06e-01 71.4% 73.1%
5052436 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 36.0 3.25e-01 76.8% 88.7%
3579591 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.51 38.0 3.82e-01 89.3% 81.8%
3274582 4.1.1.365 beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.50 35.0 3.56e-01 91.1% 76.4%