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HG798901.1__CDL68853.1__X__00036

Bact-Vir

HG798901.1__CDL68853.1__X__00036

Identity

Accession:
HG798901 ↗
Kingdom:
phage

Quality

85.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sherbrookevirus› Clostridium_phage_phiCDHM11

TaxID: 1445553

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-57
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m6zA03 1.10.150.740 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 46.0 4.34e-01 75.4% 94.3%
3o66B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 47.0 3.39e-01 96.5% 92.9%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.55 39.0 2.92e-01 100.0% 27.8%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 40.0 3.45e-01 84.2% 80.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046439 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 44.0 3.08e-01 86.0% 73.2%
5043111 3542.1.1.2 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP 0.55 47.0 3.13e-01 98.2% 96.4%
5014458 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 42.0 3.10e-01 98.2% 78.9%
4608998 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 39.0 2.68e-01 87.7% 34.2%
4022689 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.52 41.0 2.69e-01 89.5% 52.8%
3744144 632.6.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Med15_fungi 0.51 44.0 3.20e-01 94.7% 95.5%
D2 medium residues 60-104_207-234
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.54 33.0 3.17e-01 74.0% 54.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4575178 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.58 40.0 3.03e-01 86.3% 29.2%
D3 medium residues 105-206
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 44.0 4.92e-01 79.4% 84.2%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 41.0 4.06e-01 83.3% 64.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.09e-01 84.3% 62.5%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 39.0 3.88e-01 84.3% 63.8%
1m0sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 28.0 3.33e-01 81.4% 69.4%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 40.0 3.15e-01 90.2% 86.7%
3n71A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.50 28.0 2.92e-01 82.4% 59.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3957963 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 42.0 4.33e-01 84.3% 73.7%
4999532 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 41.0 3.15e-01 84.3% 30.2%
None — 0.56 39.0 4.15e-01 82.4% 82.2%
5066057 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.56 36.0 3.79e-01 91.2% 72.2%
3823425 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 40.0 3.22e-01 100.0% 40.5%
3611536 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 33.0 3.06e-01 79.4% 48.1%
3788345 2003.1.5.176 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BMT5-like 0.52 43.0 3.16e-01 91.2% 55.9%
3639134 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.52 25.0 2.92e-01 81.4% 64.3%
3413264 60.1.1.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › SPOC 0.51 37.0 3.31e-01 75.5% 87.6%
5039839 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 38.0 3.82e-01 84.3% 77.1%
3718689 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.51 39.0 3.53e-01 83.3% 79.3%
4049326 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.50 34.0 2.59e-01 84.3% 29.6%