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HG962376.1__CDN96806.1__X__00045
Bact-VirHG962376.1__CDN96806.1__X__00045
Identity
- Accession:
- HG962376 ↗
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Taxonomy
TaxID: 1476390
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 67-129
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.82 | 54.0 | 4.45e-01 | 98.4% | 39.4% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 59.0 | 5.45e-01 | 98.4% | 66.7% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 51.0 | 4.32e-01 | 96.8% | 46.7% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.67 | 51.0 | 4.52e-01 | 85.7% | 83.5% |
| 4oagB02 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.67 | 57.0 | 4.11e-01 | 98.4% | 83.9% |
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.66 | 49.0 | 5.10e-01 | 88.9% | 90.9% |
| 7q4lA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 37.0 | 3.02e-01 | 98.4% | 30.5% |
| 4gniA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.62 | 46.0 | 4.83e-01 | 88.9% | 91.2% |
| 5c68A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 45.0 | 3.77e-01 | 96.8% | 45.9% |
| 4by6C00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.60 | 45.0 | 3.35e-01 | 85.7% | 30.1% |
| 4arnA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.60 | 39.0 | 2.60e-01 | 71.4% | 15.5% |
| 2b4lA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.59 | 49.0 | 3.68e-01 | 90.5% | 81.5% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.59 | 43.0 | 3.76e-01 | 93.7% | 50.0% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.59 | 43.0 | 3.84e-01 | 74.6% | 65.1% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.58 | 48.0 | 3.51e-01 | 100.0% | 33.9% |
| 3f0zA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.57 | 47.0 | 3.87e-01 | 93.7% | 82.6% |
| 1ygyB03 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.57 | 43.0 | 3.31e-01 | 79.4% | 56.8% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 31.0 | 3.44e-01 | 100.0% | 69.4% |
| 6hxpA01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.54 | 46.0 | 4.01e-01 | 95.2% | 94.9% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 39.0 | 3.08e-01 | 93.7% | 34.7% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.54 | 46.0 | 3.87e-01 | 100.0% | 91.2% |
| 3gkeA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.53 | 36.0 | 2.97e-01 | 73.0% | 56.2% |
| 1o97D01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 42.0 | 3.12e-01 | 93.7% | 81.5% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 40.0 | 3.32e-01 | 87.3% | 43.7% |
| 3gmiA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 41.0 | 2.93e-01 | 90.5% | 79.5% |
| 1vloA01 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.51 | 38.0 | 3.04e-01 | 84.1% | 37.1% |
| 2b1xA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.51 | 40.0 | 3.30e-01 | 92.1% | 45.2% |
| 1cw1A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.51 | 41.0 | 2.63e-01 | 100.0% | 15.4% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 3.43e-01 | 93.7% | 57.6% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 37.0 | 2.98e-01 | 81.0% | 65.2% |
| 1zswA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 40.0 | 2.99e-01 | 90.5% | 83.7% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013811 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 63.0 | 6.74e-01 | 96.8% | 87.3% |
| 2393452 | 101.43.1.1 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N | 0.82 | 59.0 | 6.21e-01 | 100.0% | 83.9% |
| 4974452 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.82 | 53.0 | 5.67e-01 | 90.5% | 76.4% |
| 4948578 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.73 | 62.0 | 4.77e-01 | 96.8% | 91.7% |
| 3280341 | 211.1.1.24 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N | 0.68 | 45.0 | 4.87e-01 | 88.9% | 86.0% |
| 4937843 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.67 | 51.0 | 3.15e-01 | 82.5% | 22.7% |
| 3245748 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.67 | 56.0 | 3.94e-01 | 96.8% | 61.9% |
| 4221255 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.66 | 56.0 | 3.91e-01 | 96.8% | 55.7% |
| 5053480 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.64 | 45.0 | 4.58e-01 | 74.6% | 100.0% |
| 3656431 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.64 | 47.0 | 2.83e-01 | 95.2% | 11.2% |
| 3507099 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.62 | 54.0 | 3.86e-01 | 100.0% | 68.5% |
| 4929483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 56.0 | 4.51e-01 | 100.0% | 57.5% |
| 3332764 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.62 | 45.0 | 4.09e-01 | 93.7% | 56.5% |
| 5080470 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.61 | 50.0 | 3.51e-01 | 98.4% | 37.4% |
| 4977897 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 49.0 | 3.86e-01 | 90.5% | 76.3% |
| 222214 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.60 | 39.0 | 2.61e-01 | 71.4% | 15.8% |
| 4220398 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.59 | 43.0 | 3.15e-01 | 76.2% | 71.8% |
| 3863857 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 42.0 | 3.92e-01 | 76.2% | 88.7% |
| 5014886 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.59 | 42.0 | 3.84e-01 | 82.5% | 56.5% |
| 4518176 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 50.0 | 4.09e-01 | 100.0% | 80.8% |
| 5053646 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.59 | 42.0 | 3.93e-01 | 93.7% | 58.8% |
| 4427813 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.58 | 38.0 | 3.28e-01 | 71.4% | 41.0% |
| 4971601 | 241.14.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C | 0.57 | 35.0 | 3.41e-01 | 85.7% | 54.3% |
| 4963899 | 2008.1.1.229 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7116 | 0.57 | 35.0 | 2.97e-01 | 73.0% | 34.9% |
| 2126270 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.57 | 49.0 | 3.69e-01 | 100.0% | 76.1% |
| 4465073 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.57 | 44.0 | 3.80e-01 | 93.7% | 52.9% |
| 3509038 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.57 | 44.0 | 3.83e-01 | 87.3% | 54.0% |
| 3423947 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.56 | 48.0 | 3.22e-01 | 96.8% | 63.8% |
| 3677248 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.56 | 47.0 | 3.09e-01 | 95.2% | 70.8% |
| 5010640 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 3.59e-01 | 76.2% | 72.2% |
| 5056572 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.56 | 42.0 | 2.73e-01 | 100.0% | 17.6% |
| 4234995 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.55 | 37.0 | 3.94e-01 | 100.0% | 80.0% |
| 4479376 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.55 | 37.0 | 3.17e-01 | 71.4% | 39.1% |
| 3677732 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.55 | 48.0 | 2.88e-01 | 100.0% | 82.4% |
| 4408024 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.55 | 32.0 | 3.30e-01 | 95.2% | 60.0% |
| 3252404 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.55 | 40.0 | 3.60e-01 | 81.0% | 53.7% |
| 4097938 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.55 | 42.0 | 3.52e-01 | 82.5% | 68.2% |
| 4680318 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.54 | 36.0 | 3.27e-01 | 74.6% | 47.8% |
| 5053794 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.54 | 44.0 | 3.47e-01 | 88.9% | 58.5% |
| 3547343 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.54 | 41.0 | 3.87e-01 | 84.1% | 90.0% |
| 2756142 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.54 | 37.0 | 3.86e-01 | 87.3% | 83.3% |
| 3885751 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.54 | 40.0 | 3.58e-01 | 82.5% | 56.8% |
| 3927687 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.54 | 45.0 | 4.00e-01 | 96.8% | 92.6% |
| 4431518 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.53 | 42.0 | 3.71e-01 | 90.5% | 57.9% |
| 5051857 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.53 | 39.0 | 3.60e-01 | 93.7% | 57.8% |
| 3476001 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.53 | 40.0 | 3.65e-01 | 87.3% | 59.1% |
| 3926189 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.53 | 45.0 | 3.96e-01 | 100.0% | 91.0% |
| 3285546 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 38.0 | 3.22e-01 | 77.8% | 92.7% |
| 3272410 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.52 | 44.0 | 3.74e-01 | 100.0% | 84.5% |
| 3576395 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.52 | 44.0 | 3.67e-01 | 100.0% | 91.7% |
| 3995113 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.52 | 38.0 | 3.46e-01 | 87.3% | 55.8% |
| 5028744 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.51 | 40.0 | 3.58e-01 | 85.7% | 63.3% |
| 4117857 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 41.0 | 3.54e-01 | 88.9% | 53.3% |
| 4031431 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.50 | 33.0 | 3.37e-01 | 93.7% | 67.7% |
D2
medium
residues 5-66