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HM004124.1__ADG59941.1__Acj9p041__00041

Bact-Vir

HM004124.1__ADG59941.1__Acj9p041__00041

Identity

Accession:
HM004124 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-33_100-150
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.90 83.0 6.07e-01 98.8% 89.8%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.87 81.0 5.63e-01 100.0% 45.0%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 63.0 6.11e-01 84.1% 68.1%
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 65.0 5.72e-01 84.1% 59.1%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.81 60.0 6.56e-01 81.7% 96.9%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.78 56.0 5.41e-01 75.6% 68.5%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.78 69.0 5.59e-01 100.0% 52.9%
3a7kB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.77 57.0 3.93e-01 78.0% 25.6%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.76 51.0 5.56e-01 72.0% 83.8%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 57.0 5.97e-01 81.7% 89.0%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.74 60.0 5.43e-01 90.2% 64.9%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 61.0 4.35e-01 90.2% 30.9%
1kxpD02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.73 42.0 4.17e-01 80.5% 53.4%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 52.0 5.27e-01 80.5% 75.3%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.72 54.0 5.61e-01 93.9% 84.4%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.72 55.0 4.93e-01 82.9% 58.8%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 52.0 4.84e-01 79.3% 61.8%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 58.0 5.91e-01 89.0% 89.9%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.71 52.0 4.24e-01 78.0% 41.3%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 63.0 5.04e-01 100.0% 54.1%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 55.0 4.99e-01 84.1% 65.7%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 60.0 4.25e-01 95.1% 35.9%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 46.0 5.05e-01 72.0% 86.6%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 51.0 5.48e-01 79.3% 95.6%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 49.0 4.98e-01 76.8% 98.7%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 5.46e-01 80.5% 100.0%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 54.0 5.52e-01 95.1% 94.8%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 42.0 4.91e-01 89.0% 91.4%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.66 50.0 4.12e-01 91.5% 45.5%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.65 56.0 4.37e-01 96.3% 91.8%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.65 56.0 5.74e-01 95.1% 98.8%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 51.0 5.28e-01 84.1% 97.3%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.37e-01 76.8% 62.7%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.63 49.0 4.90e-01 86.6% 79.1%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 49.0 4.45e-01 82.9% 63.6%
1hwyA01 1.10.287.140 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 38.0 4.54e-01 73.2% 96.1%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 52.0 4.84e-01 93.9% 73.5%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 42.0 4.75e-01 72.0% 91.9%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 51.0 4.66e-01 90.2% 66.4%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 46.0 4.26e-01 86.6% 60.4%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 50.0 4.55e-01 86.6% 67.6%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.62 51.0 4.63e-01 100.0% 65.8%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 51.0 4.53e-01 89.0% 65.8%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.61 49.0 4.74e-01 84.1% 78.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 48.0 4.99e-01 85.4% 93.5%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 46.0 4.87e-01 81.7% 93.0%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.60 52.0 4.04e-01 97.6% 47.3%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.60 41.0 3.89e-01 74.4% 59.8%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.60 44.0 4.68e-01 76.8% 89.0%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.58 40.0 3.63e-01 70.7% 51.3%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 43.0 3.84e-01 87.8% 68.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3733140 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.88 82.0 6.49e-01 100.0% 52.9%
4593595 3835.1.1.0 alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein 0.88 82.0 5.83e-01 100.0% 38.5%
3404270 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.86 79.0 6.67e-01 100.0% 64.6%
3727074 3291.1.1.85 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF31016 0.84 77.0 6.22e-01 100.0% 56.0%
3273299 109.4.1.1530 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG4_m, COG4_C 0.84 76.0 4.42e-01 100.0% 13.4%
4300897 5094.1.1.1 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.83 77.0 6.49e-01 100.0% 78.5%
3437287 5086.1.1.199 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF31016 0.82 74.0 5.76e-01 100.0% 50.3%
4843090 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.80 66.0 5.90e-01 87.8% 70.5%
3970666 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.80 67.0 6.98e-01 100.0% 98.7%
3298752 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.80 58.0 5.16e-01 76.8% 60.0%
4012197 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.79 61.0 6.37e-01 82.9% 94.7%
3242255 174.1.1.13 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 0.79 67.0 5.26e-01 90.2% 48.7%
4671784 3755.3.1.310 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA 0.79 69.0 5.98e-01 93.9% 65.8%
4944884 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.78 58.0 5.53e-01 81.7% 68.4%
3973208 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.77 56.0 5.88e-01 76.8% 84.0%
3194777 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.77 66.0 5.79e-01 93.9% 66.7%
4000107 3567.1.1.122 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › BAR 0.77 70.0 5.55e-01 100.0% 51.9%
3470751 3755.3.1.297 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.76 64.0 5.03e-01 89.0% 55.0%
3766956 622.4.1.22 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › FAM186A-B_N 0.76 56.0 4.88e-01 81.7% 52.5%
4259224 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 71.0 5.63e-01 100.0% 67.7%
3784055 192.24.1.0 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.76 69.0 5.86e-01 98.8% 71.5%
3600869 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.76 68.0 6.10e-01 100.0% 79.1%
3973899 5086.1.1.92 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE 0.75 67.0 5.54e-01 100.0% 87.6%
3607135 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.74 68.0 5.71e-01 100.0% 77.8%
5055960 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 57.0 5.00e-01 81.7% 55.8%
3235839 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.74 63.0 4.88e-01 91.5% 45.7%
4994765 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.74 57.0 5.34e-01 82.9% 69.0%
3408277 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 63.0 5.55e-01 91.5% 67.0%
3489761 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.73 65.0 4.71e-01 97.6% 66.7%
3282651 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.73 62.0 3.77e-01 95.1% 14.6%
3212246 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.73 65.0 5.10e-01 100.0% 80.0%
3967398 3755.1.1.1 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO 0.72 66.0 5.36e-01 100.0% 81.3%
5020701 3755.3.1.637 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.72 63.0 4.50e-01 95.1% 73.2%
3294437 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.71 50.0 5.08e-01 72.0% 95.0%
5048328 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 55.0 5.63e-01 84.1% 87.5%
4249161 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.71 49.0 5.45e-01 72.0% 89.2%
3215465 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.71 56.0 4.72e-01 82.9% 53.8%
3940779 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 53.0 4.87e-01 85.4% 61.9%
3607086 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.68 51.0 5.18e-01 93.9% 80.0%
4352409 375.1.1.300 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SOAR 0.68 55.0 4.55e-01 85.4% 52.9%
3920125 3755.3.1.450 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uso1_p115_C 0.68 62.0 4.64e-01 100.0% 94.4%
3740547 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.68 56.0 5.11e-01 91.5% 79.1%
4124331 192.15.1.76 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID 0.67 47.0 4.21e-01 73.2% 53.6%
4210642 3755.1.1.12 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ 0.67 53.0 4.56e-01 86.6% 55.4%
3181110 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.66 59.0 5.57e-01 95.1% 85.3%
4018124 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.66 57.0 4.16e-01 97.6% 72.5%
3785344 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 57.0 5.06e-01 95.1% 70.8%
3270696 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.66 57.0 5.29e-01 98.8% 74.3%
3518386 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.65 45.0 4.73e-01 74.4% 78.7%
3962991 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 58.0 4.40e-01 100.0% 74.9%
3716516 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.64 53.0 4.29e-01 89.0% 47.7%
4146694 192.29.1.277 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin 0.64 46.0 5.00e-01 79.3% 95.4%
3968484 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.62 48.0 5.16e-01 82.9% 97.1%
4033238 101.1.2.804 alpha arrays › HTH › HTH › winged helix domain › PF27113 0.61 50.0 3.87e-01 87.8% 42.3%
3608012 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 48.0 4.83e-01 85.4% 82.4%
3313420 611.9.1.4 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.60 52.0 4.41e-01 97.6% 69.3%
D2 high residues 35-97
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 69.0 6.28e-01 98.4% 89.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 50.0 5.76e-01 85.7% 100.0%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 63.0 5.31e-01 96.8% 79.8%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.69 55.0 4.41e-01 87.3% 90.2%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 55.0 4.36e-01 88.9% 83.1%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 46.0 4.36e-01 92.1% 59.5%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 55.0 4.91e-01 95.2% 77.1%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 52.0 4.09e-01 87.3% 78.7%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 55.0 4.68e-01 98.4% 68.2%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 44.0 3.70e-01 82.5% 40.7%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 51.0 3.21e-01 85.7% 94.8%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 42.0 2.63e-01 73.0% 13.7%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.63 45.0 3.35e-01 77.8% 86.0%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 40.0 3.60e-01 82.5% 45.2%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.76e-01 92.1% 46.7%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 39.0 2.50e-01 73.0% 13.9%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.59 42.0 3.02e-01 76.2% 76.8%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 4.29e-01 82.5% 85.7%
2pnlA00 3.30.230.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.58 48.0 3.45e-01 95.2% 46.3%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.67e-01 87.3% 63.9%
1dynA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.69e-01 87.3% 58.4%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.60e-01 85.7% 72.4%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.85e-01 79.4% 75.9%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 49.0 3.97e-01 96.8% 94.1%
1na6A01 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 41.0 3.14e-01 87.3% 96.5%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.54 41.0 2.61e-01 87.3% 20.5%
3isrA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.53 45.0 3.20e-01 93.7% 91.9%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.60e-01 85.7% 57.6%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 40.0 2.74e-01 82.5% 28.6%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 32.0 2.76e-01 81.0% 35.1%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 40.0 2.76e-01 90.5% 47.2%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 35.0 2.86e-01 77.8% 96.6%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 37.0 3.51e-01 82.5% 81.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036294 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 65.0 5.54e-01 98.4% 84.0%
5064437 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 63.0 5.27e-01 98.4% 86.4%
4927437 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 55.0 5.34e-01 88.9% 72.9%
5062351 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 61.0 5.06e-01 98.4% 73.0%
426155 2.24.1.1 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.71 60.0 5.80e-01 93.7% 88.7%
3502530 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.70 40.0 2.52e-01 71.4% 10.9%
5058918 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 60.0 4.96e-01 96.8% 67.0%
3474148 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 4.90e-01 98.4% 66.7%
3418511 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.68 45.0 4.91e-01 74.6% 86.0%
5844 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.68 56.0 4.61e-01 92.1% 100.0%
3376984 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.68 50.0 3.01e-01 79.4% 97.5%
4963296 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 48.0 3.51e-01 81.0% 85.9%
1954221 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.65 52.0 4.91e-01 87.3% 90.7%
5081617 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 43.0 2.72e-01 73.0% 12.4%
3404941 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.65 50.0 3.74e-01 87.3% 72.4%
3611344 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 45.0 3.82e-01 85.7% 42.7%
3933335 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.64 44.0 2.57e-01 71.4% 9.0%
3677716 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.64 45.0 2.82e-01 73.0% 15.9%
4995163 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.63 43.0 2.94e-01 71.4% 32.9%
3875068 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 43.0 2.60e-01 71.4% 14.5%
4935568 2.1.1.371 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DuOB 0.62 53.0 4.51e-01 100.0% 60.0%
4093535 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 48.0 3.86e-01 87.3% 46.2%
4964487 218.1.1.12 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF26684 0.61 50.0 4.26e-01 93.7% 100.0%
4392916 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 47.0 3.54e-01 88.9% 72.0%
3731834 7579.1.1.127 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_3 0.61 48.0 3.09e-01 90.5% 65.2%
3268736 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.61 42.0 2.53e-01 74.6% 15.6%
3516025 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 46.0 4.00e-01 87.3% 66.7%
3562938 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 46.0 3.79e-01 87.3% 48.0%
3738266 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.60 42.0 2.48e-01 74.6% 13.5%
3403710 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 38.0 2.36e-01 73.0% 11.1%
3993809 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 46.0 3.54e-01 87.3% 54.2%
3892039 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 40.0 2.46e-01 71.4% 10.9%
3679236 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.59 51.0 3.12e-01 98.4% 99.0%
3602037 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.83e-01 95.2% 46.7%
3921576 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 45.0 3.58e-01 87.3% 56.4%
3481243 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 40.0 2.45e-01 73.0% 12.0%
3585974 5.1.4.151 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.58 50.0 2.93e-01 100.0% 91.0%
3242737 5.1.5.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BCAS3_WD40 0.58 50.0 2.97e-01 98.4% 96.3%
3926600 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 3.78e-01 87.3% 56.4%
3405822 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.57 44.0 3.47e-01 87.3% 62.1%
3790971 5.1.4.151 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.57 49.0 2.94e-01 100.0% 96.8%
3705795 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 44.0 2.70e-01 84.1% 93.8%
3507107 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 39.0 2.46e-01 73.0% 14.3%
3348638 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 48.0 3.92e-01 93.7% 66.1%
3937807 5.1.4.151 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.56 48.0 2.89e-01 100.0% 97.7%
3270877 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 43.0 3.41e-01 87.3% 50.0%
3648413 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.83e-01 90.5% 60.0%
4001211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 36.0 3.48e-01 87.3% 55.1%
3482138 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.59e-01 92.1% 8.3%
3210613 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 42.0 3.47e-01 88.9% 57.7%
4338928 233.1.1.6 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.54 39.0 3.54e-01 81.0% 54.4%
3497653 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 3.41e-01 85.7% 82.0%
3931552 2.1.1.92 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_D_N 0.54 46.0 3.59e-01 96.8% 62.1%
3511457 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 40.0 3.28e-01 87.3% 60.7%
3250163 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 3.31e-01 93.7% 50.5%
3327575 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 38.0 3.39e-01 82.5% 60.0%
3859895 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 34.0 2.21e-01 84.1% 11.7%
3566291 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 39.0 3.20e-01 88.9% 57.8%
3258685 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 3.34e-01 87.3% 50.4%
3170622 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.51 35.0 2.01e-01 74.6% 9.3%
3475361 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 36.0 2.98e-01 87.3% 38.5%