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HM004124.1__ADG59949.1__Acj9p049__00049

Bact-Vir

HM004124.1__ADG59949.1__Acj9p049__00049

Identity

Accession:
HM004124 ↗
Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-101
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 46.0 5.24e-01 81.8% 89.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.85e-01 80.5% 84.1%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 43.0 3.78e-01 72.7% 45.6%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.65 48.0 4.29e-01 77.9% 74.8%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 3.84e-01 84.4% 60.8%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 50.0 4.37e-01 87.0% 63.8%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 50.0 4.49e-01 87.0% 69.8%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 3.84e-01 79.2% 93.9%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 47.0 4.15e-01 85.7% 75.2%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 4.29e-01 75.3% 98.7%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 42.0 4.04e-01 74.0% 93.3%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 41.0 3.50e-01 71.4% 54.3%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 48.0 3.77e-01 90.9% 58.2%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 38.0 4.20e-01 79.2% 82.3%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.59 42.0 3.02e-01 76.6% 31.7%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.59 34.0 3.15e-01 71.4% 41.3%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 42.0 2.88e-01 80.5% 23.8%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 44.0 3.80e-01 85.7% 65.1%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.75e-01 76.6% 75.7%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.65e-01 90.9% 76.5%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 30.0 3.15e-01 75.3% 57.6%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 2.93e-01 70.1% 91.0%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.57e-01 87.0% 85.0%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.16e-01 74.0% 99.2%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 36.0 3.19e-01 70.1% 69.9%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.68e-01 89.6% 95.9%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 4.37e-01 100.0% 100.0%
1vpbA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.52 45.0 3.28e-01 98.7% 72.9%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 38.0 3.22e-01 77.9% 76.6%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.52 40.0 3.11e-01 85.7% 62.2%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.51 37.0 3.28e-01 77.9% 85.2%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 37.0 3.02e-01 90.9% 41.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 4.17e-01 83.1% 95.5%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.25e-01 96.1% 77.7%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.52e-01 87.0% 97.3%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.50 40.0 3.51e-01 87.0% 92.3%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.50 43.0 3.16e-01 98.7% 71.9%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 38.0 2.85e-01 88.3% 90.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253266 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.04e-01 83.1% 63.8%
3410370 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.55e-01 83.1% 87.1%
3666058 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.67 48.0 4.53e-01 76.6% 90.5%
4023312 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 53.0 4.48e-01 85.7% 71.2%
4938919 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.73e-01 81.8% 81.5%
3558388 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.66 46.0 4.88e-01 72.7% 95.4%
3628669 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 44.0 4.74e-01 71.4% 81.5%
1144815 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.65 50.0 4.99e-01 83.1% 82.5%
3212189 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 48.0 4.19e-01 77.9% 53.9%
3396462 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 45.0 4.86e-01 74.0% 96.9%
4847872 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.65 44.0 3.80e-01 70.1% 82.8%
2494924 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.64 46.0 4.64e-01 76.6% 82.1%
5013672 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 45.0 4.81e-01 74.0% 93.8%
4399545 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 45.0 4.09e-01 76.6% 81.0%
4079740 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.62 49.0 4.46e-01 85.7% 100.0%
3995204 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.62 43.0 4.68e-01 72.7% 86.2%
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 48.0 3.79e-01 84.4% 52.7%
4546371 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.62 49.0 4.30e-01 88.3% 85.8%
5048982 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 50.0 3.59e-01 89.6% 92.3%
1233328 4.1.1.116 beta barrels › SH3 › SH3 › SH3 › SH3_14 0.61 45.0 3.81e-01 79.2% 94.6%
3595817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 44.0 3.91e-01 76.6% 94.5%
3588750 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 41.0 4.16e-01 71.4% 82.7%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 44.0 4.16e-01 81.8% 66.7%
3212073 4.1.1.60 beta barrels › SH3 › SH3 › SH3 › YccV-like 0.59 52.0 4.19e-01 100.0% 93.5%
5029482 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 46.0 4.58e-01 83.1% 80.0%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.79e-01 100.0% 78.9%
4043017 2.1.1.173 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RADX 0.59 48.0 3.83e-01 90.9% 83.7%
3824181 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.59 37.0 4.10e-01 70.1% 83.3%
5013602 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 43.0 4.10e-01 77.9% 76.7%
3304389 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 3.11e-01 87.0% 28.5%
3199494 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 47.0 3.43e-01 89.6% 41.8%
4974213 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.58 47.0 3.52e-01 89.6% 95.4%
3289254 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.57 49.0 4.55e-01 93.5% 83.2%
3248736 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.57 41.0 4.09e-01 76.6% 82.5%
4994776 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.57 43.0 4.02e-01 80.5% 88.4%
5073695 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 41.0 3.84e-01 77.9% 68.0%
3572060 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.57 43.0 3.81e-01 84.4% 62.5%
4679671 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 40.0 3.57e-01 76.6% 55.9%
3704832 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.56 43.0 2.73e-01 84.4% 29.2%
3848485 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.56 49.0 4.13e-01 100.0% 86.7%
1174546 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.55 42.0 3.51e-01 83.1% 62.1%
3663237 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 39.0 3.93e-01 75.3% 81.2%
5016199 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.55 39.0 3.32e-01 76.6% 76.3%
4939419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 40.0 3.97e-01 80.5% 81.2%
3555102 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 43.0 3.78e-01 89.6% 88.3%
4983267 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.53 39.0 3.08e-01 79.2% 74.9%
4275948 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.53 45.0 3.90e-01 94.8% 77.5%
4087500 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 39.0 3.70e-01 77.9% 77.8%
4971890 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 46.0 3.36e-01 98.7% 74.9%
3717251 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 34.0 3.93e-01 70.1% 94.5%
5025335 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.52 46.0 3.50e-01 100.0% 77.8%
3926482 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 42.0 2.95e-01 93.5% 36.2%
3643537 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.51 44.0 2.93e-01 94.8% 28.1%
4933830 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 45.0 3.35e-01 100.0% 76.1%
3651019 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.51 44.0 3.02e-01 96.1% 44.0%
5075588 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.51 38.0 3.61e-01 79.2% 77.8%
5063914 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.51 44.0 3.33e-01 100.0% 73.0%
3832543 7516.1.1.41 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase 0.51 42.0 2.41e-01 92.2% 32.8%
3670182 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.50 35.0 3.10e-01 92.2% 45.6%