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HM004124.1__ADG59976.1__Acj9p076__00076

Bact-Vir

HM004124.1__ADG59976.1__Acj9p076__00076

Identity

Accession:
HM004124 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 62.0 4.85e-01 88.7% 60.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 60.0 4.80e-01 88.7% 62.3%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 55.0 3.61e-01 98.1% 20.0%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 58.0 4.84e-01 88.7% 71.3%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.72 42.0 3.64e-01 79.2% 39.7%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 41.0 3.41e-01 90.6% 33.0%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 50.0 3.27e-01 92.5% 17.5%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.69 51.0 3.73e-01 92.5% 30.6%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 48.0 3.16e-01 94.3% 17.4%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 48.0 3.31e-01 77.4% 95.2%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.66 55.0 3.31e-01 94.3% 51.3%
4xaaA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.65 49.0 3.33e-01 84.9% 84.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.64 53.0 4.46e-01 88.7% 94.0%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 47.0 3.45e-01 83.0% 41.4%
8a5eD01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 44.0 3.90e-01 77.4% 55.7%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.61 45.0 2.81e-01 84.9% 14.7%
3tu3B02 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.60 53.0 3.37e-01 100.0% 31.6%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 52.0 3.14e-01 98.1% 49.4%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 47.0 2.86e-01 83.0% 20.1%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 45.0 3.26e-01 84.9% 42.2%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 48.0 3.03e-01 98.1% 90.2%
1qmgB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 42.0 2.81e-01 79.2% 28.2%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 46.0 3.43e-01 92.5% 78.1%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 47.0 3.09e-01 92.5% 32.8%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 42.0 3.25e-01 84.9% 33.1%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.56 49.0 3.25e-01 98.1% 27.2%
2f2uB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 2.93e-01 84.9% 25.0%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 43.0 4.02e-01 86.8% 76.1%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 40.0 2.79e-01 79.2% 28.1%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 45.0 3.81e-01 96.2% 55.2%
7b1xA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 2.82e-01 92.5% 96.3%
2lu1A00 3.30.70.2370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 46.0 3.93e-01 98.1% 60.7%
4ciuA04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 41.0 3.40e-01 81.1% 66.7%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 47.0 3.11e-01 96.2% 48.6%
2d56A00 3.30.30.110 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide 0.54 37.0 3.71e-01 83.0% 71.7%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 37.0 2.61e-01 73.6% 95.1%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 44.0 2.85e-01 94.3% 52.1%
3c3pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.03e-01 100.0% 84.3%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 40.0 2.44e-01 90.6% 12.4%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.54e-01 100.0% 71.4%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 45.0 2.87e-01 98.1% 66.7%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 37.0 3.35e-01 79.2% 71.2%
1i72A00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 37.0 2.51e-01 84.9% 18.3%
4c0kA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 39.0 2.60e-01 83.0% 34.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3422158 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.86 43.0 2.48e-01 94.3% 6.1%
3550136 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.80 65.0 4.95e-01 86.8% 84.3%
3579472 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.80 66.0 4.86e-01 88.7% 61.5%
3457807 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.79 44.0 2.67e-01 94.3% 10.0%
3482328 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 65.0 5.08e-01 88.7% 62.9%
4017372 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.79 65.0 4.94e-01 88.7% 69.6%
4977598 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.78 64.0 4.97e-01 88.7% 60.0%
3406351 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.78 62.0 4.79e-01 84.9% 87.3%
3377363 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.77 43.0 2.35e-01 86.8% 4.0%
60305 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 62.0 4.89e-01 88.7% 62.3%
3228583 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 60.0 4.63e-01 86.8% 64.3%
4112182 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 61.0 4.65e-01 88.7% 55.9%
3303026 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.75 57.0 3.30e-01 81.1% 10.1%
4181293 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 60.0 4.74e-01 88.7% 60.0%
3593339 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 60.0 4.64e-01 88.7% 57.4%
3641031 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.74 43.0 2.59e-01 92.5% 9.5%
3297832 109.4.1.1335 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.74 62.0 3.41e-01 90.6% 6.8%
3668229 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.73 42.0 2.48e-01 90.6% 8.3%
4989946 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.72 52.0 4.10e-01 79.2% 37.3%
3464775 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.72 42.0 2.48e-01 83.0% 8.9%
3806349 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.71 60.0 3.41e-01 92.5% 9.9%
3479024 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.70 54.0 5.34e-01 84.9% 80.0%
3252212 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.69 60.0 5.33e-01 98.1% 68.0%
4485921 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 55.0 4.24e-01 88.7% 64.2%
3208120 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.68 58.0 4.21e-01 98.1% 66.5%
3708820 7581.1.1.22 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt 0.67 52.0 3.25e-01 84.9% 27.3%
3362870 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.67 39.0 2.45e-01 90.6% 12.2%
3368295 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.67 54.0 3.18e-01 84.9% 28.6%
3712081 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 59.0 4.53e-01 94.3% 61.8%
3381794 207.1.1.57 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 0.66 58.0 3.12e-01 100.0% 6.3%
3327381 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.66 48.0 2.61e-01 88.7% 4.6%
4588825 589.1.1.20 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › TraD_N 0.66 56.0 4.12e-01 92.5% 78.5%
3512585 5010.1.1.5 extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › TraD_N 0.65 56.0 4.27e-01 92.5% 88.7%
1000517 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 57.0 4.52e-01 94.3% 81.2%
3935332 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 56.0 4.17e-01 94.3% 52.3%
4996620 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 43.0 3.62e-01 81.1% 41.1%
3803650 109.4.1.1335 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.65 50.0 2.82e-01 83.0% 8.2%
3340500 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.64 51.0 3.10e-01 84.9% 23.8%
3381391 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.64 48.0 2.94e-01 88.7% 13.2%
3377656 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.63 46.0 2.62e-01 88.7% 7.8%
3349197 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.63 46.0 2.95e-01 77.4% 21.3%
3299745 207.1.1.185 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6 0.62 44.0 2.66e-01 100.0% 10.1%
3373074 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.62 44.0 2.51e-01 100.0% 7.0%
3811338 109.4.1.2260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_19 0.61 50.0 3.09e-01 88.7% 16.6%
4056782 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.61 46.0 2.68e-01 83.0% 15.5%
3446412 109.4.1.95 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.60 47.0 2.86e-01 83.0% 16.0%
3348687 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.60 47.0 3.57e-01 86.8% 42.3%
3305137 3569.1.1.0 extended segments › Epidermal growth factor receptor transmembrane-juxtamembrane segment-like › Epidermal growth factor receptor transmembrane-juxtamembrane segment › Epidermal growth factor receptor transmembrane-juxtamembrane segment 0.58 46.0 4.31e-01 98.1% 71.9%
3465965 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 45.0 2.71e-01 92.5% 57.1%
3324101 207.1.1.47 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_6 0.57 41.0 2.44e-01 86.8% 10.2%
3429998 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.57 46.0 2.87e-01 88.7% 50.5%
3808015 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.56 38.0 2.57e-01 71.7% 28.6%
4791706 304.126.1.4 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.55 38.0 3.48e-01 77.4% 52.7%
3641285 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.55 43.0 2.42e-01 83.0% 11.0%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 40.0 2.52e-01 79.2% 36.8%
1036625 3122.1.1.1 a+b complex topology › MESD › MESD › MESD › Mesd 0.55 42.0 3.74e-01 84.9% 57.7%
3442448 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.53 38.0 2.17e-01 75.5% 9.4%
3442732 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.53 38.0 2.91e-01 77.4% 42.3%
5078195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.42e-01 79.2% 66.7%
185814 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.51 36.0 3.17e-01 77.4% 95.3%