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HM004124.1__ADG60013.1__Acj9p113__00113

Bact-Vir

HM004124.1__ADG60013.1__Acj9p113__00113

Identity

Accession:
HM004124 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Acajnonavirus› Acinetobacter_phage_Acj9

TaxID: 760939

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78
PDB
Domain cluster: rep: HM114315.1__AAT38500.1__Acj133p073__00073__D4-77
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.73 59.0 5.69e-01 97.4% 77.9%
3qooA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.73 56.0 4.68e-01 83.1% 79.1%
3kuvB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.71 55.0 4.57e-01 83.1% 84.2%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.70 56.0 5.64e-01 97.4% 88.2%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 53.0 4.23e-01 83.1% 75.0%
3hm0A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 53.0 4.52e-01 83.1% 88.1%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 46.0 5.21e-01 93.5% 96.4%
2oiwA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 53.0 4.38e-01 83.1% 78.2%
4gakA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 55.0 3.82e-01 93.5% 72.0%
5ahoA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.64 39.0 2.90e-01 80.5% 24.6%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.45e-01 97.4% 84.1%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 54.0 4.43e-01 97.4% 70.4%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.61 47.0 3.64e-01 83.1% 63.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 45.0 4.62e-01 89.6% 82.7%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.59 41.0 3.59e-01 89.6% 46.7%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 44.0 3.73e-01 81.8% 76.5%
1g1bA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.58 43.0 3.44e-01 80.5% 67.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.47e-01 97.4% 86.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.18e-01 96.1% 73.5%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.51e-01 94.8% 84.6%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 49.0 3.83e-01 93.5% 84.0%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.57 37.0 4.10e-01 83.1% 100.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 4.08e-01 98.7% 94.0%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 3.14e-01 94.8% 97.9%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 37.0 3.61e-01 72.7% 59.3%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 3.86e-01 98.7% 71.4%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 41.0 4.15e-01 84.4% 81.6%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.92e-01 85.7% 83.5%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.54 48.0 3.56e-01 98.7% 93.2%
2rqxA00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 4.24e-01 88.3% 93.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.01e-01 93.5% 81.3%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.50 41.0 2.77e-01 89.6% 73.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014318 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.76 50.0 5.09e-01 89.6% 69.3%
3988706 243.3.1.13 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.74 44.0 4.67e-01 84.4% 65.7%
3987601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 47.0 5.67e-01 85.7% 100.0%
3241917 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.72 53.0 3.55e-01 98.7% 20.8%
2732105 719.1.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.72 45.0 5.39e-01 83.1% 100.0%
5035305 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 47.0 4.63e-01 85.7% 63.7%
4952478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 54.0 5.54e-01 94.8% 86.7%
4079500 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.70 54.0 3.99e-01 83.1% 54.5%
4093456 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.70 54.0 4.06e-01 83.1% 58.4%
4949036 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.69 44.0 5.20e-01 81.8% 100.0%
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.69 43.0 4.12e-01 79.2% 54.4%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.97e-01 94.8% 81.4%
3266046 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.66 44.0 4.90e-01 83.1% 90.0%
3474038 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 59.0 4.81e-01 100.0% 87.1%
3889557 378.1.1.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.65 51.0 3.70e-01 92.2% 31.2%
5049477 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 47.0 5.19e-01 96.1% 98.3%
4519674 4.1.1.186 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5397 0.64 45.0 5.02e-01 97.4% 98.3%
3212945 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 40.0 4.48e-01 89.6% 86.4%
4464658 274.1.1.59 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG 0.61 41.0 3.59e-01 83.1% 46.5%
4608418 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 43.0 4.19e-01 75.3% 82.4%
3593519 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.60 52.0 4.21e-01 100.0% 87.1%
3665959 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.59 51.0 3.21e-01 92.2% 26.2%
3648728 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.59 51.0 3.24e-01 92.2% 29.4%
3990074 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.59 46.0 4.20e-01 84.4% 78.1%
3663778 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.59 50.0 3.25e-01 92.2% 29.6%
3604446 2004.1.1.480 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.59 52.0 3.07e-01 100.0% 78.1%
None — 0.58 51.0 3.31e-01 96.1% 49.9%
3709058 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 52.0 4.15e-01 100.0% 57.4%
3763497 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 46.0 4.66e-01 96.1% 88.0%
5026087 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 41.0 2.63e-01 80.5% 23.6%
5009568 243.5.1.1 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 0.55 41.0 3.86e-01 83.1% 64.2%
3597599 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.55 39.0 3.62e-01 93.5% 57.0%
3723478 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 45.0 3.57e-01 94.8% 96.5%
3245258 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.54 39.0 3.38e-01 76.6% 75.2%
4025057 5.1.4.284 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, EIF3I 0.54 43.0 2.89e-01 88.3% 80.0%
3344584 5.1.5.98 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › b-prop_At3g26010-like 0.54 45.0 3.15e-01 92.2% 36.5%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.53 40.0 3.80e-01 96.1% 65.0%
3722341 243.5.1.1 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 0.53 40.0 3.78e-01 83.1% 66.3%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.53 44.0 4.10e-01 96.1% 74.0%
5052205 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 46.0 2.71e-01 100.0% 79.1%
3454355 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.52 46.0 3.08e-01 100.0% 60.9%
3904009 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 44.0 2.86e-01 94.8% 27.6%
3434352 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 43.0 2.95e-01 94.8% 36.6%
3902096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 40.0 3.18e-01 85.7% 60.6%