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HM004124.1__ADG60026.1__Acj9p126__00126

Bact-Vir

HM004124.1__ADG60026.1__Acj9p126__00126

Identity

Accession:
HM004124 ↗
Kingdom:
phage

Quality

60.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
D2 high residues 181-271
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 47.0 4.74e-01 93.4% 66.7%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 5.03e-01 91.2% 71.4%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.68 48.0 3.61e-01 92.3% 29.7%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 53.0 4.51e-01 93.4% 51.0%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.81e-01 91.2% 75.9%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 5.82e-01 100.0% 94.5%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 4.91e-01 93.4% 92.6%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 43.0 5.09e-01 89.0% 100.0%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.38e-01 92.3% 73.2%
2ve3B00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.64 53.0 3.48e-01 93.4% 74.5%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.64 46.0 3.52e-01 90.1% 32.1%
1lddA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 5.18e-01 91.2% 98.6%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.75e-01 93.4% 73.3%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 41.0 4.20e-01 91.2% 69.8%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 5.01e-01 94.5% 91.7%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.18e-01 91.2% 67.7%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 5.06e-01 89.0% 100.0%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 44.0 4.58e-01 94.5% 84.0%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 43.0 4.75e-01 98.9% 94.4%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 4.63e-01 90.1% 100.0%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.82e-01 97.8% 92.2%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.72e-01 92.3% 100.0%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.59 46.0 4.90e-01 90.1% 92.6%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.75e-01 94.5% 80.4%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.97e-01 94.5% 97.6%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 43.0 4.24e-01 92.3% 72.4%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.76e-01 93.4% 94.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 3.85e-01 93.4% 55.0%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.58 35.0 4.10e-01 80.2% 90.2%
1wjtA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.58 36.0 3.46e-01 82.4% 54.4%
1scmB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 38.0 4.31e-01 89.0% 91.2%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 4.11e-01 93.4% 72.6%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.56 48.0 4.08e-01 95.6% 61.5%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.56 36.0 3.88e-01 93.4% 79.2%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.60e-01 96.7% 100.0%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 33.0 3.71e-01 70.3% 79.2%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.54 42.0 4.50e-01 93.4% 100.0%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 36.0 3.68e-01 86.8% 73.6%
2vlaA03 1.10.10.2090 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 44.0 4.05e-01 92.3% 84.2%
1ui6A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 46.0 3.64e-01 100.0% 56.8%
3pasA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 46.0 3.65e-01 100.0% 57.9%
2k8oA00 1.20.5.2120 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 28.0 3.25e-01 70.3% 76.7%
2scpA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 36.0 3.02e-01 85.7% 39.1%
1xdpA01 1.20.58.310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain 0.51 41.0 3.97e-01 89.0% 86.7%
2oy9A01 1.10.220.80 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › BH2638-like 0.51 37.0 3.96e-01 81.3% 89.5%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.75e-01 95.6% 68.7%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.83e-01 96.7% 88.1%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032459 101.1.2.297 alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.79 58.0 6.19e-01 93.4% 87.5%
3891461 101.1.2.606 alpha arrays › HTH › HTH › winged helix domain › RPC5_C 0.76 52.0 5.44e-01 94.5% 76.5%
5010623 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 54.0 4.80e-01 92.3% 55.2%
3597985 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 5.81e-01 92.3% 88.7%
4929122 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.73 46.0 5.33e-01 91.2% 89.2%
5031685 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.72 47.0 5.23e-01 94.5% 85.7%
4979555 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.72 47.0 5.51e-01 92.3% 100.0%
5081885 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 5.51e-01 93.4% 87.5%
5045022 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 52.0 4.70e-01 93.4% 58.3%
5025299 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 52.0 4.82e-01 94.5% 61.7%
5079453 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 4.94e-01 94.5% 65.5%
4997786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 52.0 5.38e-01 94.5% 83.5%
4988334 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.69 51.0 5.15e-01 93.4% 77.8%
5006986 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.69 51.0 4.91e-01 94.5% 67.6%
4982868 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 5.23e-01 93.4% 82.4%
4091599 4156.1.1.6 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.69 53.0 3.89e-01 94.5% 32.2%
4964961 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.14e-01 94.5% 76.8%
5042403 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.68 52.0 4.51e-01 94.5% 54.1%
4955748 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.68 44.0 4.46e-01 83.5% 66.7%
4932302 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.67 50.0 5.27e-01 94.5% 88.7%
4934434 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 50.0 4.28e-01 93.4% 49.7%
5019593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.24e-01 94.5% 85.9%
3420318 604.16.1.0 alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain 0.67 50.0 4.91e-01 80.2% 83.0%
4026719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 4.78e-01 94.5% 62.4%
3555783 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.66 47.0 4.76e-01 91.2% 73.1%
5061613 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 5.42e-01 94.5% 90.6%
5075915 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 5.01e-01 94.5% 83.5%
5000306 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 5.31e-01 93.4% 89.4%
4993671 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 5.01e-01 93.4% 82.2%
3219370 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.65 45.0 4.76e-01 91.2% 82.5%
5002286 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.24e-01 94.5% 52.1%
4995114 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.91e-01 94.5% 78.9%
5055033 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.64 50.0 5.03e-01 94.5% 83.3%
3652823 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 5.09e-01 97.8% 90.0%
4988535 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.64 48.0 4.58e-01 79.1% 74.3%
5054005 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 5.16e-01 94.5% 86.7%
4932388 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.64 44.0 4.74e-01 96.7% 86.7%
4979216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 5.27e-01 94.5% 90.0%
5035866 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.63 49.0 4.76e-01 94.5% 75.0%
3497894 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.63 46.0 4.76e-01 91.2% 81.9%
5005519 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 51.0 4.77e-01 95.6% 70.2%
5057920 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.63 51.0 5.24e-01 96.7% 92.9%
5032533 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 4.98e-01 94.5% 88.2%
3594005 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 3.87e-01 92.3% 43.6%
5077428 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.95e-01 95.6% 85.6%
3704488 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 57.0 5.16e-01 98.9% 85.0%
4098952 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.62 48.0 5.11e-01 98.9% 95.0%
5077469 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 5.13e-01 94.5% 87.6%
4119938 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.62 49.0 3.36e-01 94.5% 24.5%
3577481 101.1.2.416 alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.62 53.0 4.37e-01 93.4% 77.5%
3287376 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.61 45.0 3.66e-01 87.9% 40.6%
3355197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.67e-01 94.5% 76.0%
4321924 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.60 50.0 4.93e-01 94.5% 87.4%
3824526 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.11e-01 92.3% 57.0%
3443787 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.72e-01 92.3% 91.8%
3827266 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.13e-01 92.3% 56.6%
3781100 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 51.0 3.26e-01 100.0% 68.3%
2391543 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 46.0 3.62e-01 93.4% 41.1%
3592490 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.65e-01 91.2% 95.0%
3601711 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 43.0 3.27e-01 81.3% 43.2%
3782980 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 50.0 3.16e-01 100.0% 64.2%
3183030 101.1.2.519 alpha arrays › HTH › HTH › winged helix domain › DUF7791 0.56 49.0 3.76e-01 95.6% 43.9%
3515401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 4.35e-01 96.7% 75.0%
4991685 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.40e-01 95.6% 81.8%
5044812 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.42e-01 93.4% 69.3%
3829906 2484.1.1.198 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 0.53 45.0 3.24e-01 96.7% 67.6%
D3 medium residues 111-168
PDB