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HM004124.1__ADG60027.1__Acj9p127__00127

Bact-Vir

HM004124.1__ADG60027.1__Acj9p127__00127

Identity

Accession:
HM004124 ↗
Kingdom:
phage

Quality

94.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Acajnonavirus› Acinetobacter_phage_Acj9

TaxID: 760939

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-100
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 60.0 5.48e-01 100.0% 77.1%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.67 55.0 4.59e-01 94.0% 75.6%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 47.0 4.64e-01 82.0% 70.4%
3ugjA02 1.10.8.750 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain 0.66 46.0 4.40e-01 76.0% 61.3%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.88e-01 96.0% 100.0%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 45.0 4.04e-01 96.0% 92.4%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.02e-01 86.0% 59.5%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 41.0 3.76e-01 82.0% 91.8%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 46.0 3.64e-01 96.0% 46.4%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 2.82e-01 96.0% 91.5%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 42.0 3.95e-01 92.0% 85.3%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 45.0 3.29e-01 98.0% 38.7%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 41.0 3.82e-01 92.0% 80.0%
2i62A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 2.88e-01 100.0% 62.3%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 40.0 3.28e-01 98.0% 47.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4493137 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.78 69.0 4.69e-01 100.0% 50.3%
4048642 101.1.1.304 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.77 67.0 6.26e-01 100.0% 96.8%
4238817 101.1.1.101 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.74 53.0 5.67e-01 94.0% 97.5%
3941890 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 63.0 5.73e-01 100.0% 88.6%
3963018 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.70 63.0 4.80e-01 98.0% 69.7%
4108324 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.69 58.0 4.07e-01 100.0% 34.3%
3534466 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.69 58.0 5.43e-01 98.0% 83.1%
4984058 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.40e-01 88.0% 100.0%
3467989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 5.14e-01 98.0% 88.3%
3924273 101.1.2.75 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_alpha 0.65 56.0 4.98e-01 100.0% 67.1%
3509166 101.1.1.244 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS 0.64 54.0 4.97e-01 100.0% 77.1%
3720000 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.63 51.0 4.76e-01 100.0% 97.1%
3494078 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.84e-01 100.0% 86.2%
3350998 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 49.0 4.68e-01 94.0% 86.7%
2477 101.1.1.93 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2_like 0.60 47.0 4.74e-01 98.0% 92.0%
3203378 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.61e-01 100.0% 81.5%
3928403 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 44.0 4.41e-01 96.0% 86.0%
3736802 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 4.42e-01 100.0% 86.7%
3337333 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.57 47.0 3.14e-01 96.0% 38.3%
1867991 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.57 42.0 3.70e-01 84.0% 85.0%
4034164 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.56 42.0 3.24e-01 84.0% 54.4%
4940290 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.54 45.0 3.05e-01 100.0% 78.6%
3465994 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.54 44.0 3.94e-01 96.0% 69.3%