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HM004124.1__ADG60050.1__Acj9p150__00150

Bact-Vir

HM004124.1__ADG60050.1__Acj9p150__00150

Identity

Accession:
HM004124 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Acajnonavirus› Acinetobacter_phage_Acj9

TaxID: 760939

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-44
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.67 55.0 4.67e-01 97.7% 59.7%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.62 51.0 4.68e-01 100.0% 95.0%
4efoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 47.0 3.97e-01 97.7% 88.8%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 46.0 3.69e-01 95.3% 61.8%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 4.60e-01 95.3% 94.9%
1fl7D00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.58 47.0 3.64e-01 95.3% 65.1%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 48.0 4.61e-01 95.3% 78.0%
3ptaA03 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 40.0 2.80e-01 76.7% 36.6%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 39.0 2.82e-01 72.1% 38.6%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 3.46e-01 90.7% 41.9%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 44.0 3.67e-01 95.3% 47.3%
1fneA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.57 38.0 3.11e-01 81.4% 38.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.56 43.0 2.84e-01 95.3% 39.7%
1qhdA02 1.10.1350.10 Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain 0.55 41.0 2.67e-01 86.0% 54.2%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.55 45.0 4.18e-01 95.3% 84.2%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.70e-01 97.7% 76.1%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 3.10e-01 93.0% 72.6%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.54 42.0 3.63e-01 88.4% 60.0%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 42.0 3.51e-01 97.7% 75.5%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.04e-01 95.3% 69.3%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.37e-01 90.7% 59.1%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.54 40.0 3.81e-01 86.0% 67.3%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.54 37.0 2.67e-01 74.4% 44.9%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 43.0 3.87e-01 95.3% 67.7%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 3.45e-01 100.0% 70.1%
1qxfA00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.53 37.0 3.53e-01 95.3% 60.3%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 37.0 2.51e-01 79.1% 31.7%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.66e-01 100.0% 55.7%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 2.83e-01 93.0% 31.1%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.20e-01 93.0% 42.6%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 36.0 2.68e-01 83.7% 48.6%
4aqsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 2.65e-01 95.3% 58.3%
4bfeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.38e-01 93.0% 77.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3704645 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 61.0 4.80e-01 97.7% 48.9%
4013590 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.65 39.0 2.89e-01 79.1% 21.9%
3562501 3075.1.1.0 ↗ a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.63 53.0 4.41e-01 97.7% 62.5%
4025343 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 52.0 3.05e-01 100.0% 31.7%
4929843 4123.1.1.0 ↗ few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like 0.60 46.0 4.46e-01 93.0% 100.0%
3175336 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 48.0 4.08e-01 95.3% 61.3%
5072330 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 44.0 3.90e-01 93.0% 90.0%
4986717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 44.0 4.00e-01 95.3% 98.5%
3825952 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.55 44.0 3.53e-01 100.0% 45.7%
4156749 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.55 43.0 2.74e-01 95.3% 19.3%
2485688 64.5.1.1 ↗ beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB › CON_HrpB 0.55 38.0 4.01e-01 76.7% 88.9%
4778874 3423.1.1.3 ↗ a+b three layers › Nonstructural protein V › Nonstructural protein V › Nonstructural protein V › zf-Paramyx-P 0.54 40.0 3.81e-01 86.0% 67.3%
3433407 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.53 41.0 3.01e-01 90.7% 57.8%
3433727 1.1.1.10 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.52 39.0 2.77e-01 100.0% 43.1%
3941019 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.52 36.0 2.84e-01 76.7% 28.7%
3363678 7504.1.1.3 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.51 42.0 2.75e-01 90.7% 20.0%
2809021 221.1.1.18 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG8 0.50 38.0 2.89e-01 100.0% 31.7%