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HM004124.1__ADG60115.1__Acj9p215__00215

Bact-Vir

HM004124.1__ADG60115.1__Acj9p215__00215

Identity

Accession:
HM004124 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Acajnonavirus› Acinetobacter_phage_Acj9

TaxID: 760939

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-86
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.73 51.0 5.26e-01 82.8% 78.2%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 50.0 4.02e-01 77.6% 74.3%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 53.0 4.38e-01 89.7% 96.2%
7mdhA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.63 54.0 3.95e-01 100.0% 80.3%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.63 45.0 2.81e-01 75.9% 84.8%
6sy1A02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.62 50.0 3.04e-01 87.9% 88.1%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.61 46.0 3.53e-01 82.8% 51.8%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.61 42.0 3.15e-01 100.0% 27.0%
2zy2A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 47.0 3.45e-01 98.3% 34.0%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 4.15e-01 89.7% 74.2%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.12e-01 98.3% 100.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.63e-01 87.9% 82.6%
3ed3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 39.0 3.13e-01 74.1% 86.8%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.55 46.0 3.99e-01 96.6% 97.9%
4ewcA01 2.20.25.560 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 40.0 4.15e-01 77.6% 98.1%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 42.0 2.81e-01 82.8% 29.8%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.39e-01 74.1% 66.3%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 42.0 3.48e-01 91.4% 98.3%
3fnrA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 41.0 2.58e-01 81.0% 15.8%
4dcuA03 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 45.0 4.01e-01 91.4% 74.4%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 47.0 3.58e-01 98.3% 93.0%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.54 46.0 3.04e-01 94.8% 63.9%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 3.89e-01 100.0% 74.5%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.40e-01 86.2% 69.7%
1f7uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 40.0 2.48e-01 81.0% 51.3%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.92e-01 94.8% 98.9%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 3.61e-01 100.0% 98.5%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.53 42.0 3.42e-01 84.5% 77.9%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 42.0 3.58e-01 100.0% 98.3%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 39.0 3.40e-01 94.8% 52.7%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.51 37.0 3.23e-01 81.0% 51.1%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.51 43.0 3.42e-01 96.6% 74.2%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.50 40.0 3.57e-01 89.7% 68.6%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 45.0 3.28e-01 100.0% 38.0%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.50 34.0 2.91e-01 72.4% 74.1%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930709 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.83 43.0 2.86e-01 77.6% 15.4%
3999192 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.82 41.0 3.65e-01 79.3% 36.3%
3838973 885.1.1.1 ↗ a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.70 39.0 2.93e-01 77.6% 25.4%
5057424 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.69 41.0 2.71e-01 79.3% 15.5%
3886778 64.1.1.17 ↗ beta meanders › WW domain-like › WW domain › WW domain › SRCR 0.66 51.0 5.22e-01 84.5% 96.4%
4013234 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 49.0 2.88e-01 81.0% 30.2%
3726808 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.65 54.0 3.88e-01 100.0% 30.6%
2387792 1205.1.1.0 ↗ a+b two layers › C-terminal domain of CdiA toxin 0.65 47.0 4.37e-01 77.6% 72.0%
4797890 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.64 50.0 4.59e-01 93.1% 89.4%
3981752 829.1.1.1 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.63 48.0 3.74e-01 82.8% 59.2%
3945142 252.2.1.7 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF30395 0.62 40.0 4.32e-01 82.8% 78.0%
3291096 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 45.0 4.68e-01 100.0% 87.3%
4641056 885.1.1.1 ↗ a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.60 49.0 3.98e-01 98.3% 76.8%
5044666 101.1.8.2 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.59 52.0 3.83e-01 100.0% 54.4%
3934420 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.59 45.0 3.00e-01 81.0% 58.1%
3729602 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.58 46.0 4.01e-01 96.6% 55.8%
3940607 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 45.0 4.55e-01 91.4% 93.2%
3263955 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 51.0 3.93e-01 98.3% 84.5%
3710859 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.58 44.0 2.74e-01 82.8% 89.1%
3921576 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 49.0 3.79e-01 98.3% 80.0%
5063118 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.58 51.0 3.12e-01 100.0% 31.7%
3838435 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.57 40.0 3.44e-01 74.1% 52.6%
3684518 304.107.1.0 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.57 43.0 3.40e-01 79.3% 96.5%
3621074 109.4.1.353 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N 0.57 48.0 2.78e-01 100.0% 9.4%
4928783 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 43.0 4.19e-01 93.1% 74.6%
4093535 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 48.0 3.75e-01 98.3% 76.2%
138326 101.1.8.2 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.55 39.0 3.13e-01 86.2% 33.8%
3591459 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 48.0 4.28e-01 100.0% 90.6%
5082761 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.55 46.0 3.65e-01 98.3% 69.2%
4458453 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.54 46.0 4.11e-01 98.3% 67.5%
5036173 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.54 39.0 2.73e-01 79.3% 51.4%
None — 0.53 40.0 2.64e-01 82.8% 37.5%
3255946 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.84e-01 87.9% 93.8%
3708791 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.53 41.0 2.89e-01 87.9% 39.0%
3939881 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 40.0 3.81e-01 89.7% 73.3%
3626212 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 42.0 3.17e-01 91.4% 43.9%
3952995 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.53 47.0 4.08e-01 100.0% 65.9%
5037971 309.1.2.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain 0.53 43.0 3.36e-01 98.3% 41.6%
3940115 604.29.1.1 ↗ alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.52 47.0 3.71e-01 100.0% 72.2%
4972906 3755.3.1.636 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF6788 0.52 46.0 3.62e-01 100.0% 59.2%
3181892 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.52 40.0 2.58e-01 89.7% 97.4%
4477974 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.51 43.0 2.77e-01 93.1% 27.3%
4190615 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.51 43.0 2.75e-01 93.1% 26.8%
3469940 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 45.0 2.95e-01 100.0% 74.0%
5061842 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 41.0 3.07e-01 96.6% 81.7%
3233582 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 43.0 2.78e-01 100.0% 33.7%
5055979 304.39.1.1 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.51 45.0 3.79e-01 98.3% 63.2%
3288081 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.50 42.0 4.06e-01 98.3% 83.1%
4981301 304.39.1.1 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.50 45.0 3.83e-01 100.0% 64.2%
3520433 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 44.0 3.00e-01 98.3% 37.6%