←Back to structures

HM032710.1__ADI96362.1__Ac42p124__00124

Bact-Vir

HM032710.1__ADI96362.1__Ac42p124__00124

Identity

Accession:
HM032710 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Acinetobacter_phage_Ac42

TaxID: 762660

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-46
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lrvF00 1.10.1220.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE 0.74 62.0 4.63e-01 100.0% 93.2%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 51.0 3.01e-01 84.2% 10.8%
1ivyB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 52.0 2.98e-01 100.0% 9.8%
4ggnB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 51.0 4.54e-01 100.0% 68.9%
4az3A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 51.0 3.16e-01 100.0% 17.0%
4yt2A02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.60 44.0 3.26e-01 81.6% 51.9%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 47.0 3.65e-01 100.0% 67.4%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.53 39.0 2.44e-01 94.7% 26.4%
7f0aA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.51 39.0 2.65e-01 100.0% 70.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3805676 1128.1.1.13 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.72 63.0 4.77e-01 100.0% 76.7%
3277930 632.2.1.17 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 0.67 55.0 5.07e-01 94.7% 74.0%
2593137 3567.1.1.2 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › GP41 0.57 38.0 3.88e-01 73.7% 77.4%
D2 medium residues 55-105
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 56.0 5.18e-01 100.0% 78.6%
1omvA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 50.0 4.17e-01 84.3% 72.1%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 5.04e-01 98.0% 100.0%
1miwA03 1.20.58.560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 47.0 3.97e-01 96.1% 46.0%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 4.22e-01 86.3% 72.2%
1xo0A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.59 48.0 3.93e-01 100.0% 53.2%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 50.0 3.97e-01 100.0% 45.1%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 45.0 3.39e-01 88.2% 52.1%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 50.0 4.28e-01 100.0% 80.5%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 47.0 3.95e-01 98.0% 58.6%
7crnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 47.0 3.11e-01 98.0% 70.4%
1tuzA00 1.10.238.110 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Diacylglycerol kinase alpha. 0.57 46.0 3.72e-01 100.0% 83.1%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.56 38.0 3.21e-01 70.6% 56.7%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.55 45.0 3.38e-01 98.0% 57.9%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.54 40.0 3.66e-01 78.4% 69.7%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.53 38.0 2.74e-01 78.4% 70.8%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 43.0 3.97e-01 100.0% 77.8%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 34.0 3.14e-01 72.5% 56.2%
1r5jA01 3.40.50.10950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 2.93e-01 98.0% 82.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4102862 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.75 51.0 3.69e-01 70.6% 47.9%
5028090 610.3.1.0 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.74 60.0 4.41e-01 96.1% 33.1%
3435944 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.72 63.0 5.84e-01 100.0% 89.2%
4833284 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.71 54.0 3.51e-01 84.3% 19.3%
3720000 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.66 56.0 5.12e-01 100.0% 97.1%
3924273 101.1.2.75 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_alpha 0.66 55.0 4.96e-01 98.0% 67.1%
3886806 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.66 48.0 4.07e-01 80.4% 68.9%
3591303 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 48.0 4.33e-01 80.4% 58.6%
3328712 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.64 54.0 3.57e-01 100.0% 24.8%
4014593 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 5.29e-01 100.0% 94.5%
5016525 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.63 46.0 4.02e-01 80.4% 75.0%
5016159 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.62 42.0 4.05e-01 70.6% 61.7%
4961900 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.62 49.0 4.51e-01 96.1% 81.3%
3201648 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 45.0 4.70e-01 84.3% 93.3%
4984393 179.1.1.1 ↗ alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.62 51.0 4.63e-01 100.0% 76.0%
3403474 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.62 44.0 3.79e-01 80.4% 68.9%
3509166 101.1.1.244 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS 0.59 48.0 4.49e-01 98.0% 77.1%
3272680 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 4.46e-01 92.2% 93.3%
3884711 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 48.0 4.57e-01 100.0% 80.0%
3228613 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 46.0 3.85e-01 100.0% 70.5%
3395163 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.57 47.0 3.16e-01 100.0% 24.0%
4147270 242.2.1.0 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.57 45.0 4.37e-01 92.2% 100.0%
5060848 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.56 38.0 3.58e-01 70.6% 61.7%
4940290 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.55 45.0 3.08e-01 100.0% 25.6%
5045036 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.54 39.0 2.36e-01 84.3% 10.3%
3254013 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.50 35.0 3.41e-01 86.3% 66.7%
D3 medium residues 108-205
PDB
Domain cluster: rep: NC_018087.3__YP_006488820.1__ZZ1p0126__00126__D6-95
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.62e-01 76.5% 89.5%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.43e-01 74.5% 87.7%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 4.16e-01 73.5% 98.6%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.24e-01 71.4% 52.3%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 3.15e-01 73.5% 50.6%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.51 28.0 2.14e-01 78.6% 22.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718969 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 50.0 4.09e-01 71.4% 87.4%
3255902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.40e-01 75.5% 95.0%
3475807 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 45.0 4.90e-01 71.4% 98.8%
5037849 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 45.0 4.14e-01 72.4% 56.8%
4949773 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 45.0 3.89e-01 72.4% 55.2%
3665882 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 47.0 4.18e-01 79.6% 76.3%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.54 44.0 3.45e-01 88.8% 72.7%
3413864 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 41.0 3.48e-01 81.6% 68.5%