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HM046300.1__ADI49945.1__X__00002
Bact-VirHM046300.1__ADI49945.1__X__00002
Identity
- Accession:
- HM046300 ↗
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Vidaverviricetes›
Mindivirales›
Cystoviridae›
Orthocystovirus›
Cystovirus_phi6
TaxID: 10879
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-36
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ioyC02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.71 | 50.0 | 3.13e-01 | 77.1% | 13.9% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 49.0 | 4.50e-01 | 74.3% | 54.2% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.68 | 48.0 | 3.27e-01 | 77.1% | 19.6% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.65 | 47.0 | 2.82e-01 | 77.1% | 12.8% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 45.0 | 4.21e-01 | 77.1% | 57.4% |
| 2ba3A01 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.64 | 45.0 | 4.67e-01 | 80.0% | 93.1% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 42.0 | 3.55e-01 | 74.3% | 36.6% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 42.0 | 3.70e-01 | 77.1% | 46.6% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.59 | 41.0 | 4.02e-01 | 77.1% | 73.2% |
| 4pt4B00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.59 | 41.0 | 3.20e-01 | 77.1% | 28.9% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.58 | 41.0 | 3.63e-01 | 77.1% | 45.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5061659 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.90 | 66.0 | 5.07e-01 | 80.0% | 37.3% |
| 3349555 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.84 | 59.0 | 5.51e-01 | 77.1% | 60.0% |
| 3876172 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.83 | 61.0 | 5.43e-01 | 80.0% | 56.0% |
| 5052475 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.77 | 55.0 | 3.72e-01 | 80.0% | 20.8% |
| None | — | 0.76 | 55.0 | 3.15e-01 | 94.3% | 8.1% | |
| 3229498 | 101.1.1.102 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 | 0.76 | 54.0 | 3.72e-01 | 80.0% | 21.6% |
| 4955129 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.73 | 51.0 | 3.35e-01 | 77.1% | 16.9% |
| 3596754 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.69 | 59.0 | 4.88e-01 | 100.0% | 55.4% |
| 4983993 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.68 | 52.0 | 4.54e-01 | 94.3% | 65.0% |
| 4141396 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.67 | 51.0 | 3.92e-01 | 82.9% | 35.3% |
| 3970024 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.66 | 55.0 | 3.50e-01 | 97.1% | 40.6% |