←Back to structures
HM114277.1__AEQ20945.1__E3_0340__00035
Bact-VirHM114277.1__AEQ20945.1__E3_0340__00035
Identity
- Accession:
- HM114277 ↗
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-62
Domain cluster:
representative
D2
medium
residues 123-156
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7by3B01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.85 | 65.0 | 4.49e-01 | 88.2% | 26.3% |
| 8h6qD01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.77 | 54.0 | 3.15e-01 | 100.0% | 8.5% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.77 | 62.0 | 5.86e-01 | 100.0% | 77.8% |
| 3gg7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.75 | 53.0 | 3.16e-01 | 76.5% | 11.5% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.75 | 56.0 | 4.53e-01 | 82.4% | 45.5% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.74 | 57.0 | 4.77e-01 | 97.1% | 47.8% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.74 | 55.0 | 3.74e-01 | 100.0% | 21.0% |
| 2bpoA04 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.73 | 61.0 | 3.95e-01 | 97.1% | 22.2% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 58.0 | 5.34e-01 | 91.2% | 89.1% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.72 | 59.0 | 4.61e-01 | 100.0% | 41.2% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.72 | 56.0 | 4.24e-01 | 91.2% | 34.1% |
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 50.0 | 4.48e-01 | 73.5% | 52.1% |
| 4oj5B01 | 3.30.2020.50 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.72 | 59.0 | 4.41e-01 | 91.2% | 48.8% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.71 | 55.0 | 4.89e-01 | 97.1% | 63.2% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.71 | 52.0 | 4.39e-01 | 94.1% | 44.3% |
| 1o4xA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 50.0 | 4.31e-01 | 76.5% | 51.9% |
| 2d6fC03 | 1.10.150.380 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain | 0.71 | 50.0 | 4.51e-01 | 79.4% | 53.8% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 49.0 | 2.85e-01 | 76.5% | 15.2% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 54.0 | 4.72e-01 | 94.1% | 65.5% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.68 | 52.0 | 3.89e-01 | 91.2% | 78.1% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 48.0 | 4.41e-01 | 76.5% | 59.6% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.68 | 53.0 | 4.19e-01 | 100.0% | 40.0% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.68 | 55.0 | 3.46e-01 | 100.0% | 17.4% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 48.0 | 4.40e-01 | 76.5% | 59.6% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.67 | 54.0 | 4.04e-01 | 100.0% | 81.2% |
| 2lnzA00 | 1.10.286.70 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain | 0.67 | 52.0 | 5.12e-01 | 100.0% | 82.5% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 46.0 | 3.74e-01 | 76.5% | 38.0% |
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.66 | 48.0 | 4.04e-01 | 100.0% | 46.3% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.65 | 48.0 | 3.27e-01 | 97.1% | 20.9% |
| 3c57B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 4.48e-01 | 88.2% | 71.4% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 54.0 | 3.98e-01 | 100.0% | 81.1% |
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 50.0 | 4.36e-01 | 100.0% | 60.0% |
| 1lfuP00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 50.0 | 3.73e-01 | 70.6% | 29.3% |
| 1wi9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 49.0 | 4.17e-01 | 91.2% | 74.1% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.61 | 53.0 | 3.87e-01 | 100.0% | 37.5% |
| 2h09A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 44.0 | 3.64e-01 | 82.4% | 40.8% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.60 | 48.0 | 3.39e-01 | 100.0% | 28.7% |
| 1l8yA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.60 | 43.0 | 3.63e-01 | 100.0% | 40.5% |
| 1lvaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 44.0 | 3.82e-01 | 85.3% | 48.4% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 47.0 | 3.52e-01 | 100.0% | 84.6% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 4.14e-01 | 97.1% | 65.0% |
| 3o8jA02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.59 | 41.0 | 3.03e-01 | 73.5% | 25.3% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 3.84e-01 | 91.2% | 73.0% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.58 | 44.0 | 3.39e-01 | 88.2% | 63.7% |
| 1ynbA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.58 | 42.0 | 2.93e-01 | 100.0% | 21.0% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 45.0 | 3.80e-01 | 91.2% | 46.3% |
| 2oq1A02 | 1.10.930.10 | Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 | 0.57 | 43.0 | 4.18e-01 | 100.0% | 77.8% |
| 2wzfA01 | 1.10.1740.130 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.56 | 46.0 | 3.35e-01 | 100.0% | 58.7% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3935879 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.92 | 83.0 | 5.02e-01 | 100.0% | 20.5% |
| 4966469 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.89 | 70.0 | 4.55e-01 | 88.2% | 21.7% |
| 5081218 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.88 | 70.0 | 4.57e-01 | 88.2% | 21.4% |
| 4937602 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.87 | 69.0 | 4.59e-01 | 88.2% | 23.1% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.85 | 72.0 | 6.25e-01 | 100.0% | 63.6% |
| 3799156 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 75.0 | 5.72e-01 | 100.0% | 45.9% |
| 4967517 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.84 | 64.0 | 4.32e-01 | 88.2% | 23.3% |
| 4967817 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.83 | 64.0 | 4.38e-01 | 88.2% | 25.0% |
| 5040946 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.83 | 70.0 | 5.29e-01 | 100.0% | 40.0% |
| 3428162 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.83 | 64.0 | 5.37e-01 | 82.4% | 54.5% |
| 5078800 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.82 | 64.0 | 4.16e-01 | 88.2% | 20.0% |
| 4972628 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.82 | 62.0 | 4.08e-01 | 88.2% | 20.0% |
| 4993117 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.82 | 63.0 | 4.13e-01 | 88.2% | 20.9% |
| 4993076 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.81 | 63.0 | 4.22e-01 | 88.2% | 23.1% |
| 4954174 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.79 | 66.0 | 4.99e-01 | 100.0% | 37.8% |
| 5025739 | 4953.1.1.2 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C | 0.78 | 55.0 | 4.26e-01 | 76.5% | 34.7% |
| 4978168 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 58.0 | 3.90e-01 | 88.2% | 21.7% |
| 3929290 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.76 | 62.0 | 5.08e-01 | 100.0% | 50.0% |
| 4928641 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.76 | 59.0 | 4.83e-01 | 100.0% | 46.7% |
| 4999433 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.76 | 62.0 | 5.67e-01 | 100.0% | 72.0% |
| 3243507 | 101.1.1.289 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB | 0.74 | 53.0 | 4.25e-01 | 76.5% | 43.1% |
| 3730715 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 53.0 | 4.48e-01 | 76.5% | 50.9% |
| 4102625 | 132.3.1.1 ↗ | alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD | 0.73 | 55.0 | 4.79e-01 | 91.2% | 51.7% |
| 3997742 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.73 | 52.0 | 3.98e-01 | 76.5% | 37.3% |
| 3640485 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.73 | 58.0 | 3.79e-01 | 97.1% | 21.8% |
| 5083489 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.72 | 51.0 | 3.32e-01 | 79.4% | 17.6% |
| 5032897 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.72 | 59.0 | 3.61e-01 | 100.0% | 15.7% |
| None | — | 0.72 | 65.0 | 4.00e-01 | 100.0% | 24.9% | |
| 4088912 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.71 | 64.0 | 3.95e-01 | 100.0% | 24.3% |
| 5036826 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.71 | 53.0 | 4.39e-01 | 100.0% | 45.0% |
| 4981837 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 59.0 | 3.32e-01 | 97.1% | 8.5% |
| 4048893 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.71 | 59.0 | 4.79e-01 | 100.0% | 81.4% |
| 5057411 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.70 | 52.0 | 4.32e-01 | 100.0% | 45.0% |
| 3959245 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.70 | 59.0 | 4.46e-01 | 97.1% | 44.7% |
| 1634610 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.70 | 56.0 | 4.96e-01 | 100.0% | 60.7% |
| 3289310 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.69 | 55.0 | 4.84e-01 | 94.1% | 67.3% |
| 4042981 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.69 | 54.0 | 4.33e-01 | 100.0% | 41.2% |
| 4379527 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.68 | 56.0 | 4.35e-01 | 100.0% | 43.5% |
| 5037845 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.67 | 51.0 | 3.91e-01 | 100.0% | 93.3% |
| 4983508 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 51.0 | 4.24e-01 | 94.1% | 45.7% |
| 3834352 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.64 | 45.0 | 2.61e-01 | 100.0% | 7.4% |
| 3710719 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.64 | 49.0 | 4.27e-01 | 100.0% | 55.4% |
| 4162013 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 50.0 | 4.15e-01 | 100.0% | 82.9% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.62 | 45.0 | 3.67e-01 | 100.0% | 37.8% |
| 3778380 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 52.0 | 4.21e-01 | 100.0% | 55.7% |
| 5013699 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.62 | 47.0 | 3.40e-01 | 97.1% | 24.4% |
| 3469102 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.60 | 49.0 | 3.48e-01 | 100.0% | 30.0% |
| 3484301 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.59 | 46.0 | 3.13e-01 | 100.0% | 21.3% |