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HM114277.1__AEQ21007.1__E3_0930__00098

Bact-Vir

HM114277.1__AEQ21007.1__E3_0930__00098

Identity

Accession:
HM114277 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodococcus_phage_E3

TaxID: 1007869

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-105
PDB
Domain cluster: rep: NC_048734.1__YP_009841719.1__HWB90_gp051__00051__D22-133
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 42.0 4.31e-01 78.8% 53.1%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.76 44.0 4.85e-01 83.8% 71.2%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.67 31.0 4.39e-01 74.7% 93.5%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.63 32.0 3.66e-01 76.8% 66.7%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.61 35.0 3.63e-01 75.8% 59.6%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 35.0 3.50e-01 77.8% 55.7%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 38.0 4.56e-01 100.0% 100.0%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.58 34.0 3.45e-01 84.8% 57.7%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 39.0 3.46e-01 77.8% 49.3%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 34.0 3.43e-01 77.8% 56.7%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 39.0 3.48e-01 76.8% 49.6%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 32.0 2.48e-01 79.8% 24.0%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.57 35.0 3.67e-01 79.8% 65.9%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 39.0 4.12e-01 93.9% 86.0%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.56e-01 99.0% 86.9%
3ed3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 44.0 4.15e-01 88.9% 89.3%
2k18A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.96e-01 83.8% 87.0%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 33.0 3.94e-01 96.0% 96.7%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.54 41.0 3.91e-01 80.8% 100.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 37.0 3.87e-01 78.8% 78.7%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 4.29e-01 98.0% 88.8%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 30.0 3.19e-01 79.8% 62.1%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.03e-01 93.9% 52.4%
2e11A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 42.0 3.16e-01 89.9% 84.5%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.94e-01 94.9% 100.0%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 4.20e-01 100.0% 82.4%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.94e-01 96.0% 87.2%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 4.27e-01 99.0% 88.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3493556 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.85 43.0 4.16e-01 77.8% 45.5%
3250440 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.84 44.0 3.92e-01 78.8% 38.5%
3939128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.83 42.0 4.09e-01 77.8% 45.5%
3998421 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.80 46.0 5.65e-01 76.8% 87.7%
5023580 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 37.0 4.49e-01 73.7% 70.8%
3174658 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.76 45.0 4.73e-01 77.8% 65.6%
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 41.0 5.09e-01 77.8% 90.0%
3269367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 45.0 4.59e-01 78.8% 64.2%
3439990 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.72 39.0 4.16e-01 77.8% 58.9%
4157389 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.62 38.0 4.60e-01 94.9% 93.8%
4968479 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.62 42.0 3.35e-01 100.0% 34.1%
5057614 212.1.1.25 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › MVD-like_N 0.58 41.0 3.43e-01 73.7% 90.3%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.56 48.0 4.67e-01 100.0% 80.9%
3226787 2485.1.1.43 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 0.56 44.0 4.18e-01 83.8% 92.2%
4329229 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 41.0 3.22e-01 77.8% 51.1%
3949336 220.1.1.216 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.54 42.0 4.06e-01 99.0% 73.6%
3907295 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 50.0 4.54e-01 98.0% 84.8%
4674129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 4.36e-01 99.0% 81.9%
3595983 3186.1.1.0 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.54 33.0 3.54e-01 74.7% 72.3%
3887124 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 46.0 3.71e-01 99.0% 51.4%
4980465 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 4.52e-01 100.0% 93.3%
3617346 2485.1.1.43 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 0.53 41.0 3.84e-01 84.8% 86.2%
3939453 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 48.0 4.41e-01 100.0% 84.6%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 44.0 4.50e-01 99.0% 91.6%
3240833 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.52 37.0 2.70e-01 88.9% 25.6%
3627615 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.52 44.0 3.83e-01 100.0% 61.4%
3801512 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 4.10e-01 100.0% 74.2%
3595461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 46.0 4.42e-01 100.0% 83.5%
4140296 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 44.0 3.84e-01 98.0% 62.9%
4093535 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.88e-01 99.0% 66.9%
4001239 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 4.35e-01 98.0% 90.5%
3874298 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 47.0 3.99e-01 99.0% 76.8%
3598206 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 4.24e-01 99.0% 82.7%
3514692 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 47.0 4.45e-01 99.0% 92.2%
3906157 2485.1.1.19 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.50 37.0 3.74e-01 77.8% 86.0%
3743248 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.50 46.0 3.75e-01 98.0% 73.1%